Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031127.1
Length=240761
Score E
Sequences producing significant alignments: (Bits) Value
seq214244 95.1 2e-14
seq125822 86.0 1e-11
>seq214244
Length=1107
Score = 95.1 bits (104), Expect = 2e-14
Identities = 163/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130
|| ||||| || || ||||| | |||||||| || |||| ||| ||| | |
Sbjct 712 GATCGTACTGGTACAGGCACTTTGTCTATTTTTGGTCATCATATGAAATTTAATTTAAAA 653
Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190
||||| || || || || ||||| ||||| | || | | |||||| || ||||||||
Sbjct 652 AAAGGATTTCCTCTTGTTACCACAAAAAAATGTCATATTCCATCTATTATACACGAACTA 593
Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250
|| ||||| | || || || || ||||| | ||||| || | || || | ||||
Sbjct 592 TTATGGTTTTTAAAAGGTGATACTAACATTAAATATCTTAATCAAAATAAAATATCTATC 533
Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307
||| || | |||||||||||| | || || |||| || | || || || || |||
Sbjct 532 TGGAATAATTGGGCAGATGAACAAGGAGAAGTTGGTCCAATATATGGAAAACAATGG 476
>seq125822
Length=25115
Score = 86.0 bits (94), Expect = 1e-11
Identities = 169/248 (68%), Gaps = 4/248 (2%)
Strand=Plus/Plus
Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124
|||| ||||| || || || || || | | ||| || || |||||||||| || |
Sbjct 7757 AAAGAAGACCGCACGGGAACCGGAACGACCAGTATCTTTGGTCATCAGATGCGGTTC--C 7814
Query 196125 CTGCGCA--AAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCC 196182
|| ||| | || || ||| |||| || || ||||| || || || || || ||||
Sbjct 7815 CTTTGCAGGATGGATTTCCGATGGTGACGACGAAAAAATTACATATGAAGTCGATTATCC 7874
Query 196183 ACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACG 196242
| || || | ||||| | || ||||||||||| ||||| |||| ||| ||
Sbjct 7875 ATGAGTTGATTTGGTTTATCTCGGGTGACACCAACATTTCATATCTTCAAGAAAACGGCG 7934
Query 196243 TCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGC 196302
|| | || ||| | |||||||| || ||||| || |||| || || || || || |
Sbjct 7935 TCCGGATTTGGAACGAGTGGGCGGACGAAGACGGGAATCTCGGACCGGTTTATGGCGCCC 7994
Query 196303 AGTGGCGT 196310
||||||||
Sbjct 7995 AGTGGCGT 8002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 767734104344480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |