Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq214244 95.1 2e-14 seq125822 86.0 1e-11 >seq214244 Length=1107 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || ||||| || || ||||| | |||||||| || |||| ||| ||| | | Sbjct 712 GATCGTACTGGTACAGGCACTTTGTCTATTTTTGGTCATCATATGAAATTTAATTTAAAA 653 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 ||||| || || || || ||||| ||||| | || | | |||||| || |||||||| Sbjct 652 AAAGGATTTCCTCTTGTTACCACAAAAAAATGTCATATTCCATCTATTATACACGAACTA 593 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 || ||||| | || || || || ||||| | ||||| || | || || | |||| Sbjct 592 TTATGGTTTTTAAAAGGTGATACTAACATTAAATATCTTAATCAAAATAAAATATCTATC 533 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||| || | |||||||||||| | || || |||| || | || || || || ||| Sbjct 532 TGGAATAATTGGGCAGATGAACAAGGAGAAGTTGGTCCAATATATGGAAAACAATGG 476 >seq125822 Length=25115 Score = 86.0 bits (94), Expect = 1e-11 Identities = 169/248 (68%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 196065 AAAGCTGACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGAC 196124 |||| ||||| || || || || || | | ||| || || |||||||||| || | Sbjct 7757 AAAGAAGACCGCACGGGAACCGGAACGACCAGTATCTTTGGTCATCAGATGCGGTTC--C 7814 Query 196125 CTGCGCA--AAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCC 196182 || ||| | || || ||| |||| || || ||||| || || || || || |||| Sbjct 7815 CTTTGCAGGATGGATTTCCGATGGTGACGACGAAAAAATTACATATGAAGTCGATTATCC 7874 Query 196183 ACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACG 196242 | || || | ||||| | || ||||||||||| ||||| |||| ||| || Sbjct 7875 ATGAGTTGATTTGGTTTATCTCGGGTGACACCAACATTTCATATCTTCAAGAAAACGGCG 7934 Query 196243 TCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGC 196302 || | || ||| | |||||||| || ||||| || |||| || || || || || | Sbjct 7935 TCCGGATTTGGAACGAGTGGGCGGACGAAGACGGGAATCTCGGACCGGTTTATGGCGCCC 7994 Query 196303 AGTGGCGT 196310 |||||||| Sbjct 7995 AGTGGCGT 8002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 767734104344480