Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq195258 268 6e-67 seq247695 156 3e-33 seq104206 95.1 8e-15 seq249537 84.2 1e-11 seq248150 82.4 5e-11 >seq195258 Length=1176 Score = 268 bits (296), Expect = 6e-67 Identities = 606/902 (67%), Gaps = 12/902 (1%) Strand=Plus/Plus Query 97097 TAAACACGACGAGCGCGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATA 97156 |||| ||||||||| | ||||| | || | || || | || |||||||||||| Sbjct 53 TAAATACGACGAGCTCTTGAACGAACTTCATTAGGAGTTAATGCTGAAGAGTCATCAATA 112 Query 97157 AAAATATTCTGCTTGTCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCG 97216 | ||||||| || | | || | || | ||||| | || | |||||| || Sbjct 113 TATATATTCTTTTTTTTAAGTAGTACGTTAATAGTACCAGACATGCGTGACCAATCTTCA 172 Query 97217 TCGTTAAGTTGCCCTGTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAG 97276 ||||| ||||| || || ||||| || | |||| ||| | | | || || | Sbjct 173 TCGTTTAGTTGTCCAGTACGAATTCGTGCTTGATTAACTCTAGATAATGATGCTAACATC 232 Query 97277 CGCATCATCAGCTGGTGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTA 97336 |||||||| | || | | ||||| || | ||||||| ||||| || ||||| | | Sbjct 233 CGCATCATAATTTGTTCTCCTGGCATTTCTAAACTAAAAATTAATACTGGTTTATCATAA 292 Query 97337 CGAACTGCGGCATTTTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGG 97396 | | ||| |||||||| | |||||| ||||| || || || ||||||||||| | Sbjct 293 AGCATTGCAGCATTTTCACATAAATTCATTGCAAATGTTGTTTTTCCCATAGATGGTCTT 352 Query 97397 GCGGCGACAATGATGAGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATC--GG 97454 ||||| | ||| || || || || || | |||| ||| || ||||| | ||| || Sbjct 353 GCGGCAATAATAATTAGTTCAGAACGTTGTAAACCTGACGTTTTTTTATTTAAATCTTGG 412 Query 97455 TAAATCCGGTATCAAGTCCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGC 97514 | |||| |||| || ||| ||||| |||||||| ||| |||| || | |||||| | Sbjct 413 T--ATCCTGTATTAATTCCAGTTACTCCATCATGTGGTGATAGAAATAATTTTTCTATAC 470 Query 97515 GAGATACCGTTGCATCGAGAATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTT--G 97572 || || ||| |||| || || | | | ||| |||| || || |||| Sbjct 471 TAGCCACAGTTTCATCAAGTATTTGTTCTACGTTTTTAGGAC--CTGAGTCTTTTTTAAA 528 Query 97573 TCGTTTTTCAGCTATTTCAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCC 97632 |||||||| || |||| || || | ||| || ||| || | ||| | || Sbjct 529 ACGTTTTTCTGCAATTTTGAATACACTAGATTCTGCATAATCTAGTAGTTCTTCACTTTT 588 Query 97633 CCGGCCATCCTGCGCATATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACG 97692 || || | | |||||||||| | |||||||| |||||| || | |||||||| | Sbjct 589 TCGTCCTTGCGTGTCATATCCAGCATTAGCTATTTTATTTGCTACTAATATCATTTCTCT 648 Query 97693 AACAACCGCGCGTTCACGAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGT 97752 || | || ||||| | || || || ||||| ||| ||||||||| | ||| || || Sbjct 649 GACTATTGCACGTTCTCTTACTATGTCTGCATATGCAGTAATATTTGCTGTGCTAGGAGT 708 Query 97753 GTTCTTTGACATCTCCGCAAGGTACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTG 97812 ||| ||||||| || || | || | ||| | ||| ||| |||||| ||||| || || Sbjct 709 GTTTTTTGACAGTTCAGCTAAATAAGAAAATCTACCTACGCTTTCTAACTTACCTTTTTG 768 Query 97813 TTCAAGTGCTTCAGCAAGTGTTATCAAATCAATCGGTTTGCCATGACTTAATAA-CCTCT 97871 ||| | | ||||| || ||||| |||||||| || | || | | | || || | | Sbjct 769 TTCTAAAGATTCAGATAGGGTTATTAAATCAATAGGATATCC-TAAATCAAGAAGTTTTT 827 Query 97872 CCATCTCACTGAAA-ATTTCACGATGAGCATTGGTATAAAAATCATCAGCAACTATACGA 97930 ||| || ||||| ||| |||||||| || || |||||||||| ||||| | | | Sbjct 828 GCATTTC-TTGAAATATTAAACGATGAGGCTTACTAAAAAAATCATCGGCAACAACATGT 886 Query 97931 TCTGCCACTTCATCCCAGCGGCAGTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCT 97990 |||| ||| |||||| | ||||| | ||| || || || | ||||| ||||||| Sbjct 887 TCTGAAACTGTATCCCATTGTTCATTATCTAACATCAAACCGCCTAATACAGATTGTTCT 946 Query 97991 GC 97992 || Sbjct 947 GC 948 >seq247695 Length=360 Score = 156 bits (172), Expect = 3e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 96731 AAAGCCAATCTCACCGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCA 96790 |||| ||| | || |||||||| || ||||||| ||| ||||| || || | || || Sbjct 359 AAAGTCAAACAAACTGTGCCAATAGGACCATTTCTTTGTTTTCCTATTATAATTTCTGCT 300 Query 96791 ATGCCCTTCATTTCGCTATCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGG 96850 || || || | || |||| ||||||| ||| |||||||| | ||||| || | | Sbjct 299 ATTCCTTTGAAATCACTATTTTCATGATAAATTTCATCGCGATATATGAACATTATTAAG 240 Query 96851 TCTGCGTCCTGCTCAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCC 96910 || || || || || | | ||||||||||||||||||||||| || |||| ||| || Sbjct 239 TCAGCATCTTGTTCCAAAGAACCTGATTCACGTAAATCTGAATTGACAGGTCTTTTATCA 180 Query 96911 GCACGCTGTTCAAGCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCC 96970 | | ||||| | || || || |||||||| | ||| | || |||||||||||||| Sbjct 179 GATCTTTGTTCTAAAGAACGGTTCAGTTGTGAGAGTGCAATAACTGGTACTTGTAATTCT 120 Query 96971 TTCGCCAACGCCTTCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATC 97026 || || | || || || | | ||| || || |||||||| || || || || || Sbjct 119 TTTGCAAGTGCTTTTAGAGTCCTAGATATTTCTGCAATTTCTAGTGTACGATTTTC 64 >seq104206 Length=286 Score = 95.1 bits (104), Expect = 8e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 44716 TTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGCGT 44775 ||||||| || || || | || | |||||| || ||||| ||||||| ||| | Sbjct 1 TTTGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAAACCATTTT 60 Query 44776 CATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCGTA 44835 ||| ||| || | |||| | | ||||| || || || |||||||||||||| | Sbjct 61 GATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACCTTTTCGAA 120 Query 44836 AATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGTTT 44895 ||| || | ||||||||||| | ||| || || ||||| | | |||||||||| |||| Sbjct 121 GATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCATTCAGTTT 180 Query 44896 GCTCTTT 44902 ||||| Sbjct 181 TTTCTTT 187 >seq249537 Length=1253 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378 |||||||| | ||| ||||||| | |||| |||||||||||||||| ||||| |||||| Sbjct 69 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 10 Query 98379 GAGCTAAAG 98387 ||||||||| Sbjct 9 GAGCTAAAG 1 >seq248150 Length=2497 Score = 82.4 bits (90), Expect = 5e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 99555 AACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTA 99612 |||||| |||||||| |||| |||||| | |||||||||||||||||||||||||||| Sbjct 266 AACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTACCAACTGAGCTA 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 329821513835848