Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031129.1
Length=103445
Score E
Sequences producing significant alignments: (Bits) Value
seq195258 268 6e-67
seq247695 156 3e-33
seq104206 95.1 8e-15
seq249537 84.2 1e-11
seq248150 82.4 5e-11
>seq195258
Length=1176
Score = 268 bits (296), Expect = 6e-67
Identities = 606/902 (67%), Gaps = 12/902 (1%)
Strand=Plus/Plus
Query 97097 TAAACACGACGAGCGCGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATA 97156
|||| ||||||||| | ||||| | || | || || | || ||||||||||||
Sbjct 53 TAAATACGACGAGCTCTTGAACGAACTTCATTAGGAGTTAATGCTGAAGAGTCATCAATA 112
Query 97157 AAAATATTCTGCTTGTCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCG 97216
| ||||||| || | | || | || | ||||| | || | |||||| ||
Sbjct 113 TATATATTCTTTTTTTTAAGTAGTACGTTAATAGTACCAGACATGCGTGACCAATCTTCA 172
Query 97217 TCGTTAAGTTGCCCTGTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAG 97276
||||| ||||| || || ||||| || | |||| ||| | | | || || |
Sbjct 173 TCGTTTAGTTGTCCAGTACGAATTCGTGCTTGATTAACTCTAGATAATGATGCTAACATC 232
Query 97277 CGCATCATCAGCTGGTGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTA 97336
|||||||| | || | | ||||| || | ||||||| ||||| || ||||| | |
Sbjct 233 CGCATCATAATTTGTTCTCCTGGCATTTCTAAACTAAAAATTAATACTGGTTTATCATAA 292
Query 97337 CGAACTGCGGCATTTTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGG 97396
| | ||| |||||||| | |||||| ||||| || || || ||||||||||| |
Sbjct 293 AGCATTGCAGCATTTTCACATAAATTCATTGCAAATGTTGTTTTTCCCATAGATGGTCTT 352
Query 97397 GCGGCGACAATGATGAGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATC--GG 97454
||||| | ||| || || || || || | |||| ||| || ||||| | ||| ||
Sbjct 353 GCGGCAATAATAATTAGTTCAGAACGTTGTAAACCTGACGTTTTTTTATTTAAATCTTGG 412
Query 97455 TAAATCCGGTATCAAGTCCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGC 97514
| |||| |||| || ||| ||||| |||||||| ||| |||| || | |||||| |
Sbjct 413 T--ATCCTGTATTAATTCCAGTTACTCCATCATGTGGTGATAGAAATAATTTTTCTATAC 470
Query 97515 GAGATACCGTTGCATCGAGAATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTT--G 97572
|| || ||| |||| || || | | | ||| |||| || || ||||
Sbjct 471 TAGCCACAGTTTCATCAAGTATTTGTTCTACGTTTTTAGGAC--CTGAGTCTTTTTTAAA 528
Query 97573 TCGTTTTTCAGCTATTTCAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCC 97632
|||||||| || |||| || || | ||| || ||| || | ||| | ||
Sbjct 529 ACGTTTTTCTGCAATTTTGAATACACTAGATTCTGCATAATCTAGTAGTTCTTCACTTTT 588
Query 97633 CCGGCCATCCTGCGCATATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACG 97692
|| || | | |||||||||| | |||||||| |||||| || | |||||||| |
Sbjct 589 TCGTCCTTGCGTGTCATATCCAGCATTAGCTATTTTATTTGCTACTAATATCATTTCTCT 648
Query 97693 AACAACCGCGCGTTCACGAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGT 97752
|| | || ||||| | || || || ||||| ||| ||||||||| | ||| || ||
Sbjct 649 GACTATTGCACGTTCTCTTACTATGTCTGCATATGCAGTAATATTTGCTGTGCTAGGAGT 708
Query 97753 GTTCTTTGACATCTCCGCAAGGTACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTG 97812
||| ||||||| || || | || | ||| | ||| ||| |||||| ||||| || ||
Sbjct 709 GTTTTTTGACAGTTCAGCTAAATAAGAAAATCTACCTACGCTTTCTAACTTACCTTTTTG 768
Query 97813 TTCAAGTGCTTCAGCAAGTGTTATCAAATCAATCGGTTTGCCATGACTTAATAA-CCTCT 97871
||| | | ||||| || ||||| |||||||| || | || | | | || || | |
Sbjct 769 TTCTAAAGATTCAGATAGGGTTATTAAATCAATAGGATATCC-TAAATCAAGAAGTTTTT 827
Query 97872 CCATCTCACTGAAA-ATTTCACGATGAGCATTGGTATAAAAATCATCAGCAACTATACGA 97930
||| || ||||| ||| |||||||| || || |||||||||| ||||| | | |
Sbjct 828 GCATTTC-TTGAAATATTAAACGATGAGGCTTACTAAAAAAATCATCGGCAACAACATGT 886
Query 97931 TCTGCCACTTCATCCCAGCGGCAGTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCT 97990
|||| ||| |||||| | ||||| | ||| || || || | ||||| |||||||
Sbjct 887 TCTGAAACTGTATCCCATTGTTCATTATCTAACATCAAACCGCCTAATACAGATTGTTCT 946
Query 97991 GC 97992
||
Sbjct 947 GC 948
>seq247695
Length=360
Score = 156 bits (172), Expect = 3e-33
Identities = 212/296 (72%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 96731 AAAGCCAATCTCACCGTGCCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCA 96790
|||| ||| | || |||||||| || ||||||| ||| ||||| || || | || ||
Sbjct 359 AAAGTCAAACAAACTGTGCCAATAGGACCATTTCTTTGTTTTCCTATTATAATTTCTGCT 300
Query 96791 ATGCCCTTCATTTCGCTATCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGG 96850
|| || || | || |||| ||||||| ||| |||||||| | ||||| || | |
Sbjct 299 ATTCCTTTGAAATCACTATTTTCATGATAAATTTCATCGCGATATATGAACATTATTAAG 240
Query 96851 TCTGCGTCCTGCTCAATTGCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCC 96910
|| || || || || | | ||||||||||||||||||||||| || |||| ||| ||
Sbjct 239 TCAGCATCTTGTTCCAAAGAACCTGATTCACGTAAATCTGAATTGACAGGTCTTTTATCA 180
Query 96911 GCACGCTGTTCAAGCGATCGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCC 96970
| | ||||| | || || || |||||||| | ||| | || ||||||||||||||
Sbjct 179 GATCTTTGTTCTAAAGAACGGTTCAGTTGTGAGAGTGCAATAACTGGTACTTGTAATTCT 120
Query 96971 TTCGCCAACGCCTTCAGTGAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATC 97026
|| || | || || || | | ||| || || |||||||| || || || || ||
Sbjct 119 TTTGCAAGTGCTTTTAGAGTCCTAGATATTTCTGCAATTTCTAGTGTACGATTTTC 64
>seq104206
Length=286
Score = 95.1 bits (104), Expect = 8e-15
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 44716 TTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGCGT 44775
||||||| || || || | || | |||||| || ||||| ||||||| ||| |
Sbjct 1 TTTGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAAACCATTTT 60
Query 44776 CATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCGTA 44835
||| ||| || | |||| | | ||||| || || || |||||||||||||| |
Sbjct 61 GATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACCTTTTCGAA 120
Query 44836 AATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGTTT 44895
||| || | ||||||||||| | ||| || || ||||| | | |||||||||| ||||
Sbjct 121 GATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCATTCAGTTT 180
Query 44896 GCTCTTT 44902
|||||
Sbjct 181 TTTCTTT 187
>seq249537
Length=1253
Score = 84.2 bits (92), Expect = 1e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378
|||||||| | ||| ||||||| | |||| |||||||||||||||| ||||| ||||||
Sbjct 69 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 10
Query 98379 GAGCTAAAG 98387
|||||||||
Sbjct 9 GAGCTAAAG 1
>seq248150
Length=2497
Score = 82.4 bits (90), Expect = 5e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 99555 AACGGACTCGAACCGCTGACATCCTGCTTACAAGGCAGGCGCTCTACCAACTGAGCTA 99612
|||||| |||||||| |||| |||||| | ||||||||||||||||||||||||||||
Sbjct 266 AACGGAGTCGAACCGTTGACCTCCTGCGTGCAAGGCAGGCGCTCTACCAACTGAGCTA 209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 329821513835848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |