Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq125822 143 1e-29 seq81543 86.0 2e-12 seq29837 82.4 3e-11 >seq125822 Length=25115 Score = 143 bits (158), Expect = 1e-29 Identities = 262/378 (69%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 51913 ACGGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATG 51972 |||||||| | |||||| |||| |||||||| ||| | || || || || || || |||| Sbjct 7929 ACGGCGTCCGGATTTGGAACGAGTGGGCGGACGAAGACGGGAATCTCGGACCGGTTTATG 7988 Query 51973 GTAAGCAGTGGCGTAGTTGG--GATGCTGG-TGGCGGCAAGGTCATCGATCAGATCCATG 52029 | ||||||||| || || | || ||| | ||| |||||| | | Sbjct 7989 GCGCCCAGTGGCGTTCTTTCCCGAAACCGGATGGATCGACGGTT---GATCAGTTGGCCG 8045 Query 52030 AAGTCGTCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGA 52089 | ||| || | |||||||| |||| ||| ||| || | |||||| |||||||| Sbjct 8046 ATGTCATCGAGCAAATTAAGACGAATCCGGATTCTCGTCGTCTGATTGTCAGTGCTTGGA 8105 Query 52090 ATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATG 52149 || ||| | || || || ||||| ||| | |||||||| || || ||||| |||| Sbjct 8106 ATCCCGGTCAATTAGAAGAGATGGCCTTGCCGCCCTGCCACCTGCTGTTTCAATTTTATG 8165 Query 52150 TAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCG 52209 | || | || ||| | |||||||| | || || ||||||||||| | || || || | Sbjct 8166 TCGCGAACGGAAAGTTGTCGTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGGTG 8225 Query 52210 TTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAG-CAGTTGGC 52268 |||| ||||| ||||| || | ||||||||||| ||||||||| | | || | Sbjct 8226 TTCCATTTAATATTGCTTCTTACGCTTTGCTGACGCACATGATTGCTCATGTCTGTAAG- 8284 Query 52269 CTTGATGTTGGTGAATTC 52286 ||||| ||||| || ||| Sbjct 8285 CTTGAAGTTGGGGATTTC 8302 >seq81543 Length=132751 Score = 86.0 bits (94), Expect = 2e-12 Identities = 253/391 (65%), Gaps = 27/391 (7%) Strand=Plus/Minus Query 51958 TGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTGGGATGC---------TGGTGGCGGCA 52008 ||||||||||||||||| | || ||||||| || | ||| || || ||||| Sbjct 70989 TGGGTCCTGTGTATGGTCACCAATGGCGTAATTATGGTGCAAGCCAGCTTGATGACGGCA 70930 Query 52009 ------------AGGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAAGAACGATC 52056 | | | ||||||| ||| | |||| || | ||| |||| | ||| Sbjct 70929 GCTACCACAACGATGGCGTCGATCAAATCAAGCAAGTTGTTGAGCAAATAAAGAGCAATC 70870 Query 52057 CTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGT 52116 | || ||||| | || || || | |||||| || || || | | || | Sbjct 70869 CCAATTCACGACGCCTTATCGTATCGGGTTGGAACCCAGGAGAGGCCGAACAAGTCGCCT 70810 Query 52117 TGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATT 52176 || | ||||||||||| ||||| || |||| ||| ||||| ||| || || ||||| Sbjct 70809 TGCCGCCCTGCCATACTCTATTTCAGTTCTTTGTCGCTGACAATAAACTGTCATGCCAGC 70750 Query 52177 TGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCT 52236 | |||||||| || || || | ||| | || || || || || ||||| ||||| | Sbjct 70749 TATATCAGCGCTCAGCGGATTTATTCCTAGGTGTGCCATTCAATATTGCAAGCTACGCGC 70690 Query 52237 TGCTGACGCATCTGATTGCTCGAGCAGTT---GGCCTTGATGTTGGTGAATTCATTTGGA 52293 | |||| || || | || | || ||| || | || |||||||| || || |||| Sbjct 70689 TCTTGACCCACATGGTCGCAC-AG--GTTTGCGGATTGGACGTTGGTGAGTTTATCTGGA 70633 Query 52294 CTGGTGGCGACGTCCATATCTACAACAACCA 52324 | || || || |||||| || | ||||| Sbjct 70632 CAGGCGGTGATTGCCATATTTATCAAAACCA 70602 >seq29837 Length=4748 Score = 82.4 bits (90), Expect = 3e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 52044 ATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTG 52103 || |||||| |||||||| ||||||| || | || ||||||||| |||| | Sbjct 3709 ATCAAGAACAATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTT 3650 Query 52104 GATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAG 52163 | ||||| | |||| ||||| | | | || || ||||| || | || | Sbjct 3649 AAACTGATGGCACTTCCTCCATGCCACATGTTTTCACAGTTTTATGTTGCGAATGGAGAA 3590 Query 52164 CTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGT-TCTTGGGCGTTCCGTTTAACAT 52222 ||||| ||||| |||||||||| || ||||||||| |||||| ||| || |||||||| Sbjct 3589 CTTTCATGCCAAATGTATCAGCGCTCAGCCGACATGGGTCTTGG-CGTACCATTTAACAT 3531 Query 52223 TGCC 52226 |||| Sbjct 3530 TGCC 3527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189492762185080