Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq28607 699 0.0 seq218717 159 4e-34 seq207321 89.7 6e-13 seq249645 84.2 2e-11 seq48658 84.2 2e-11 >seq28607 Length=83266 Score = 699 bits (774), Expect = 0.0 Identities = 753/994 (76%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || |||||| | || | || ||||| || || || Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| ||| | | | || ||| | ||| || ||||| ||||| | |||||| Sbjct 1442 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1384 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || ||||| || |||| || || | || |||||||| Sbjct 1383 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1324 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 || || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| || Sbjct 1323 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 1264 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||| ||| | || |||||||| |||||||| ||||||| |||| |||| Sbjct 1263 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1204 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | ||||| | |||| | | ||| ||||||||||||||||||||| || ||| Sbjct 1203 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1144 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 ||| |||||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 1143 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 1084 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| || |||| || | |||||||| ||| ||||||| |||||||| || || Sbjct 1083 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1024 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 |||||| || ||||||| ||| | || |||||||||||||||||||| || |||||||| Sbjct 1023 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 964 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| || Sbjct 963 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 904 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| |||| |||||| || | | || ||||| |||||||| || || | || Sbjct 903 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 |||||| || || || ||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 || |||| |||||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| || || ||||| |||||||||||| | || ||||||||||||| ||||| Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 ||| || |||||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || || | ||||||||| || || |||||||| ||||| || |||||||| Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544 Query 164887 TCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 164920 ||||||||||||||| ||||| ||||||| |||| Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510 Score = 556 bits (616), Expect = 1e-153 Identities = 721/994 (73%), Gaps = 8/994 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| | Sbjct 32431 AGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTC 32490 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || ||||||||||| ||| | Sbjct 32491 GCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 32550 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| || ||| | || || || ||||| ||||| || | Sbjct 32551 GCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAAT 32610 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | |||||| | || | || ||||||||||| | ||||| || || | || Sbjct 32611 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 32670 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || || ||| ||||||| || |||||||| || || ||| | ||| Sbjct 32671 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATA 32730 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTACAA 165535 ||||| ||| | || || |||||||| || ||| || || ||| || ||||| || Sbjct 32731 GGTTTTATGTTACGTCAATTTGAACTTGCTCGA----TCCGTTCAATTGCGACCTTATAA 32786 Query 165536 TGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCT 165595 ||| || || ||||||||||| |||||||| || ||| ||| || || || ||||| || Sbjct 32787 TGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACT 32846 Query 165596 GGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCT 165655 ||| ||||| |||||||| || || || || || || || || || |||||| | Sbjct 32847 GGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCAT 32906 Query 165656 GCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGC 165715 ||||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || Sbjct 32907 CCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGC 32966 Query 165716 AGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTT 165775 ||| | | |||| || |||| | || |||||||||| ||| ||||| |||||||| Sbjct 32967 CGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTT 33026 Query 165776 GTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGA 165835 | |||||||||||| ||||| || ||| || ||| | ||||| | || || Sbjct 33027 ATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGA 33086 Query 165836 AACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAG 165895 ||||||||| |||||||| |||||||| || ||||| || || ||||| ||||||| Sbjct 33087 AACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTC 33146 Query 165896 CAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 165955 |||||| |||||| | || ||||||||| | ||||| || || | || | |||| || Sbjct 33147 CAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAG 33206 Query 165956 TTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 166015 | || |||| | | || || || | || || ||||| ||||| || || || ||||| Sbjct 33207 TGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGA 33266 Query 166016 GATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAA 166075 || | || || || ||||| || ||||| || |||||||| ||||| || || | || Sbjct 33267 AATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAA 33326 Query 166076 TGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCC 166135 ||||| | ||||| ||| |||| || ||| || |||||||| ||| || | ||||| Sbjct 33327 CGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 33386 Query 166136 TGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 ||| || || | ||| | || ||||| |||||| Sbjct 33387 TGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 33420 >seq218717 Length=448 Score = 159 bits (176), Expect = 4e-34 Identities = 168/220 (76%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||| ||| ||||||||||||||||| || |||| |||||||||||||||||| || Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGT 168 Query 164314 AGCATACTCTGCTCCTGTC-GCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTC 164372 ||||| || |||||||| || || || | || || ||| || | ||||| | |||| Sbjct 167 TGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTC 108 Query 164373 AAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGG 164432 |||| ||| | | ||| |||||||| || |||||| | || ||||||| || | | Sbjct 107 AAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTG 48 Query 164433 TCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCA 164472 | |||||||||||||||||||| || |||||||| || || Sbjct 47 TATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCA 8 >seq207321 Length=8752 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| ||||| ||| ||| | || ||||||||||| ||||| || | || | || Sbjct 6155 GTGCGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGATTTGCCTTA 6214 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||| | || |||| || ||||| || ||||||||||||||| ||| || Sbjct 6215 CTCATGCCGTTCTGGTTCTTGCTCTAGCTGCGCCGGTAAACTCGTCTCTGGCTTCGTTGA 6274 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGA 161697 ||| |||||| |||| ||||||| |||||||| || Sbjct 6275 CCAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGGA 6313 >seq249645 Length=476466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 156667 CTGGAAGGCATTCGTTTCTATGTTTCCTTCGCCTGCTCTTTTGCTTTCGGTGAGAACAAA 156726 || |||| ||||||||||||||| || || || ||||| ||||| || | |||| |||| Sbjct 268794 CTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCTGAGCGCAAA 268853 Query 156727 CTCATGGAAGGTTCTGCAAAGATTCTTTCTTTAATTGCTCGTGATGAATCGCAGCA 156782 | ||||||||| ||| || || || | || |||||||||||| ||| ||| Sbjct 268854 TTGATGGAAGGTAATGCCAAAATCATTAAGCTCATCGCTCGTGATGAAGCGCTGCA 268909 >seq48658 Length=532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 159830 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAGTCCTGT 159888 |||||||||||||||||||||| ||||||||||| || |||||||||||| | |||||| Sbjct 357 TAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCAAATCCTGT 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555791639124960