Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031245.1 Length=221908 Score E Sequences producing significant alignments: (Bits) Value seq206067 215 7e-51 >seq206067 Length=18993 Score = 215 bits (238), Expect = 7e-51 Identities = 510/766 (67%), Gaps = 26/766 (3%) Strand=Plus/Plus Query 20727 TGCGACTCCTACGATGTCTAATGCTGGTAAGAGTTACGGTCAACTATCTTCATGTTTCAT 20786 |||||| || || |||| ||||| ||||| ||||||||||| || ||||||||||| Sbjct 11630 TGCGACACCGACATTGTCGAATGCCGGTAAATCGTACGGTCAACTCTCGTCATGTTTCAT 11689 Query 20787 CGATACTGTAGATGACAGTCTTGATGGAATCTTTGGTAGTAATCATGACGTAGCTCGTCT 20846 |||||| || |||||| || || |||| || ||| || || || | Sbjct 11690 CGATACGGTCGATGACTCACTACGGGGCATCTATGACTCGAATACGGATGTCGCGACCTT 11749 Query 20847 ATCGAAAGATGGAGGAGGAATCGGTGTATACTTAGGTAAGATACGTAACCTAGGTTCTGA 20906 || |||| || || ||||||||||| ||| | || || || ||| | || || || Sbjct 11750 GTCAAAAGGCGGCGGCGGAATCGGTGTCTACATGGGAAAAATCCGTTCGCGCGGATCAGA 11809 Query 20907 CATCAAGAACTTCGAGGGAGTAGCTTCAGGAGTACTACCTTGGATGAAACAATTGAACAA 20966 |||||| ||| |||| ||| | || || | ||||||||||| || |||||||| Sbjct 11810 CATCAAAGGATTCAAGGGTGTATCAAGCGGTGTCATTCCTTGGATGAAGCAGTTGAACAA 11869 Query 20967 TACAGCAGTATCAGTTGATCAATTAGGACAACGTCAAGGTTCTATTGCTGTATATTTAGA 21026 |||||| || |||||||| | || |||||||| || || || || ||| | || Sbjct 11870 TACAGCGGTCAGCGTTGATCAGCTCGGCATGCGTCAAGGATCAATCGCCGTTTATCTGGA 11929 Query 21027 TGTATGGCACAAGGATATCTTCGCATTCCTAGATGCTAAATTAAATAATGGGGATGAAAG 21086 | | ||||||||||||||| ||| |||||| ||||| || || ||||| ||||| || | Sbjct 11930 TATCTGGCACAAGGATATCCTCGAATTCCTCGATGCGAAGTTGAATAACGGGGACGAGCG 11989 Query 21087 ATTACGTACGCATGACCTGTATACAGGAGTATGTATTCCAGATATATTCATGGAAATTGC 21146 || || || ||||| | | ||||| || | | || ||| |||||| | | Sbjct 11990 GTTGCGGACACATGATTTATTCACAGGCGTCAGCCTGCCGGATCATTTCATGCGGACCGT 12049 Query 21147 TGAGGAACGTGGCGAGTGGTACCTATTTGATCCTCATAAAGTTCGTAAGCATATGGGATA 21206 || | ||| ||||| ||||| | |||||||| ||| || | || | | ||||| | Sbjct 12050 CGAAGCACGAGGCGACTGGTATTTGTTTGATCCACATGAAATCCGGACGGTGATGGGCTT 12109 Query 21207 TAGCTTAGAAGACTTCTACGACGA---GAAACTAGG-AGAAGGTTCATTCCGCACTAAGT 21262 || | ||||| | | || || | | | ||| | || |||| || | || | Sbjct 12110 CAGTCTGGAAGATTCGTTTGATGAAACGGAGCAAGGCGGCAGCTTCA---CGGA-GAAAT 12165 Query 21263 ATTTCGAATGTGTAGAAGCAGCTAAGTCCGGAGTACTTCCTAAGTCCATGTACGAAGTAG 21322 || | |||||| || || ||| || || | | ||||| || Sbjct 12166 ATGAAGCATGTGT-----CAATGAACCCCG--------TCTGAGCC---GGACGAA--AG 12207 Query 21323 TTTCAGCTATCGATATATTCAAACGTATCATGAAGTCCCAGTTAGAAACTGGAGCTCCTT 21382 | | || |||||| | |||||||| |||| ||| ||| | ||||| || | || | Sbjct 12208 TACCGGCCATCGATCTCGTCAAACGTTACATGCGGTCACAGCTCGAAACCGGCACACCGT 12267 Query 21383 ATATGTTCTATCGTGATACTGTCAATAGAGCTAACCCTAATAAACATAAAGGTATGATAT 21442 | ||||||| || ||| | || || | || ||||| || |||||| || ||||| | Sbjct 12268 ACATGTTCTTCCGCGATGCGGTAAACCGCGCCAACCCAAACAAACATGCGGGCATGATCT 12327 Query 21443 ATTGCTCTAACTTATGTACTGAAATAATGCAGAACATGAAGCCGAC 21488 | | || ||| | ||| | ||||| ||||| ||||||| ||||| Sbjct 12328 ACTCGTCGAACCTCTGTTCAGAAATTATGCAAAACATGAGTCCGAC 12373 Score = 134 bits (148), Expect = 2e-26 Identities = 268/392 (68%), Gaps = 4/392 (1%) Strand=Plus/Plus Query 22027 GGAATCCGTAATGGATACATCATGGCGGTTGCACCTAACTCTTCTACTGCAGTTATCGCT 22086 ||||| || |||| ||| | ||||| || ||||| ||||| || || ||| | ||||| Sbjct 12867 GGAATGCGAAATGCCTACTTGATGGCAGTCGCACCGAACTCGTCGACGGCAATCATCGCC 12926 Query 22087 GGATCTACTGCATCTATCGATCCAGTATTCAAGAAGTTCTACTCTGAAGAGAAGAAGAAC 22146 || || || || || ||||| | | ||| || | || | ||||| ||||| ||| Sbjct 12927 GGCAGCACGGCTTCGATTGATCCGATCTACAAAAAAGTTTATGCGGAAGAAAAGAAAAAC 12986 Query 22147 TACAAGATTCCAGTTACTGCACCAGAATTATCTGCTAGA-ACTACATGGCATTATAAATC 22205 || ||||||||||| || | || || | | || || || | ||| |||||||| Sbjct 12987 TATAAGATTCCAGTGACCGTTCCCGACCTTAC-GCCGGAGACGAACTGGTTCTATAAATC 13045 Query 22206 AGCTTATAACATTGACCAACACTGGAGCATTAAACAAAATGCTGCTAGACAACGTCACGT 22265 ||| | | | ||||| |||| ||||||||| |||||||| | | ||||| ||| | Sbjct 13046 AGCGTTTGAGATTGATCAACTGTGGAGCATTCGTCAAAATGCGTCACGTCAACGCCACAT 13105 Query 22266 TGATCAATCTATCTCGTTCAACTTGTACGTTAATCGTCAAATTAAAGCTAAGGATTTACT 22325 ||| || | ||| || ||| | ||||| || || ||||| || || ||||| Sbjct 13106 TGACCAGGCGATCAGTTTTAACCTCTACGTCAAAAACAGTATCAAAGCAAAAGAGTTACT 13165 Query 22326 TGACCTACATTTCGATGCATGG-AGATCAGGTCTTAAGACAACTTACTACACTCGTTCTA 22384 || | || | || |||||| || | || | ||||| | |||||| || ||||| | Sbjct 13166 CGAGATGCACATGGAAGCATGGCAGCT-TGGGATGAAGACGATTTACTATACACGTTCGA 13224 Query 22385 CAGCAGTTGAAATTGAAGAGTGCGAATCTTGT 22416 | | |||||||| || || || || || ||| Sbjct 13225 CGACTGTTGAAATCGATGAATGTGAGTCGTGT 13256 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 23083 ACTTCTACTCTGGATTTGCATTCTTCTATAACTTAGCACGTAATCAGAAGATGCTCTCTA 23142 ||||||| || |||||||| ||||||||||| ||||| ||| | || || ||| || || Sbjct 14303 ACTTCTATTCCGGATTTGCTTTCTTCTATAATTTAGCGCGTCACCAAAAAATGGTCGGTA 14362 Query 23143 CATCGAGAATGATCAATTACATCAATCGTGATGAAC 23178 | |||| ||||||| ||||||| | |||||||||| Sbjct 14363 CCTCGACGATGATCAGTTACATCCAACGTGATGAAC 14398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707606026323840