Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq249645 123 3e-23 >seq249645 Length=476466 Score = 123 bits (136), Expect = 3e-23 Identities = 275/409 (67%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 142457 GTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACCCTTGTTGTT 142516 ||| ||||| | ||||||||||||||||| | |||||| || || ||||| ||| || Sbjct 264957 GTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATT 264898 Query 142517 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 142576 ||| || || || | |||||||| |||||||| | || || | || ||||| Sbjct 264897 TTTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGC 264838 Query 142577 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAA 142636 |||||||| | ||||||||||| || ||||||| || || ||||| ||| | || Sbjct 264837 ACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAA 264778 Query 142637 TGGAATAACACCGGTATGCTTGACTTCGCCCATGCCA---ATACGAGAACCTTCAGCACG 142693 |||||| || ||||||| |||| || |||| ||| | ||| ||||| Sbjct 264777 AGGAATACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACG 264721 Query 142694 AATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTT 142753 || ||| ||||||| || ||||| ||||| | || | || | || | | | Sbjct 264720 GATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCT 264661 Query 142754 AGCAGTTTTGTTAATAGA-TTTCAGCGAGTCGCCGGCTTCAATAACCACACAAGAACTAA 142812 || || ||| ||||| | | ||| | || || ||| || | || || || |||| Sbjct 264660 AGTGGTGGCGTTGATAGAGTCTAAGCTA-TCACCACATTCGATTAAGACGCACGAGCTAA 264602 Query 142813 ATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTAGGCAATGA 142861 | ||||| | ||| ||||| | || | ||| || || || || | ||| Sbjct 264601 ACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGA 264553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538639525212320