Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031935.1
Length=186386
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 670 0.0
seq218717 127 2e-24
seq248150 93.3 5e-14
seq126115 82.4 9e-11
>seq28607
Length=83266
Score = 670 bits (742), Expect = 0.0
Identities = 746/993 (75%), Gaps = 2/993 (0%)
Strand=Plus/Minus
Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657
|||||||||||| ||||| ||| | |||||||| || | || ||||| ||||| ||
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGTTTCATCGTCGCTTTCGTCGCTGCTCCT 177717
||||||||||| | | | || || | ||| || |||| ||| | |||||||||
Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383
Query 177718 CCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAAC 177777
|| || || || || || || |||||||| || |||| || || | || || |||||
Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323
Query 177778 ATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATC 177837
|| ||||| ||||| || ||||| ||||| ||||||||| | || || || || |||
Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263
Query 177838 TGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATC 177897
|||||||| || || | ||||| ||||| ||||| || ||||||| |||| || |
Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203
Query 177898 TTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGC 177957
| ||||| | | ||| | | || ||||||||||||||||||||| || |||
Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143
Query 177958 CTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCT 178017
|| ||||||||||| ||||| ||| ||||| || ||||| || || || ||| |||||
Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083
Query 178018 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATC 178077
|| ||| | | || || | |||||||| ||| ||||| | |||||| || || |||
Sbjct 1082 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1023
Query 178078 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 178137
||| || ||||||| ||| |||| ||||| || ||||||||||| || ||||||||
Sbjct 1022 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 963
Query 178138 TTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGT 178197
|| |||||||| || || |||||||| || || || || || || ||||| ||||| |||
Sbjct 962 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 903
Query 178198 TCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGG 178256
|| |||| ||||| | | | | || | |||||||| || || ||| | || | ||
Sbjct 902 TCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 844
Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316
|||||| ||||| ||||||||||| || |||||||| || |||||||||||||| || ||
Sbjct 843 TTACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 784
Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 178376
|| ||||||||||||| || |||||||| || ||||| | || |||||| | ||
Sbjct 783 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 724
Query 178377 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 178436
|| ||||| || || ||||| ||||| |||||| | ||| ||||||||||||| |||||
Sbjct 723 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAA 664
Query 178437 CCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACAC 178496
||| || |||||||| |||||||| || | | |||||||| || || | || ||
Sbjct 663 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATAC 604
Query 178497 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGC 178556
||||| || || | ||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 603 TTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 544
Query 178557 TCACAACTTCCCTCTTGACCTCGCTGCTGCTGA 178589
||||||||||||||| ||||| ||||||| |||
Sbjct 543 TCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 511
Score = 542 bits (600), Expect = 3e-149
Identities = 730/1014 (72%), Gaps = 2/1014 (0%)
Strand=Plus/Plus
Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898
|||||| | | ||||||||| | | | || || ||||||||||| |||||||| |||
Sbjct 32404 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32463
Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958
|| | || || ||| ||| || | || | || |||||| |||| || ||||| ||
Sbjct 32464 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32523
Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018
|| || || ||||||||||| || | ||| ||| ||| | || || || ||||| |
Sbjct 32524 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32583
Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078
|| ||||| || || ||||||||| | | | | ||||| | | | || ||||||
Sbjct 32584 ACCGCTGCCGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32643
Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138
|| ||||| || |||||||| || ||| ||| | || || || ||| |||||||
Sbjct 32644 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32703
Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197
|| |||||||| || ||||| | |||||||| ||| | || || |||||| | || ||
Sbjct 32704 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32763
Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257
|| || | | || ||||| ||||||||||| || ||||||||||||||||| |||||
Sbjct 32764 TCCGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32822
Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317
||||| || || || ||||| || || || || |||||||||||||| |||||
Sbjct 32823 TTCTGTCTTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32882
Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377
|| || || || || || ||| | ||||| | || || || || || ||||| | ||
Sbjct 32883 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32942
Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437
||| || || |||||||| || || ||| | ||||||| || |||| || || |||||
Sbjct 32943 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCA 33002
Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497
||||||||| ||||| || || | |||||||| |||| ||||||||||| ||
Sbjct 33003 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33062
Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557
|| | || || |||| || || || ||||| ||||| || || ||||| || |||||
Sbjct 33063 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33122
Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617
|| |||||||| | || || |||||| |||||| |||||||||||||||| |||||
Sbjct 33123 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33182
Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677
|| || | ||| | |||| | |||| | | || || || | ||||| |
Sbjct 33183 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACG 33242
Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737
|| |||||||| ||||| || || ||| | || || || ||||| || || ||||| ||
Sbjct 33243 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 33302
Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797
|||||| || || || || || || |||||| | |||||||||||||| | |||||
Sbjct 33303 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33362
Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851
|| ||||||||| || |||| ||||| || || | ||| | || ||||||||
Sbjct 33363 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33416
>seq218717
Length=448
Score = 127 bits (140), Expect = 2e-24
Identities = 161/220 (73%), Gaps = 1/220 (0%)
Strand=Plus/Minus
Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984
|| ||| ||||||||||||||||| || | || ||||||||||| ||||| |||
Sbjct 226 TATATGAGTCGTGAGTGGGAACTTAGTTTATGTCTGGGTATGCGTCCTTGGATTGTTGTT 167
Query 177985 GCATACTCTGCTCCAGTC-GCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCA 178043
||||| || ||||| || || || || || ||| ||| | ||||||| | |||||
Sbjct 166 GCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGTCA 107
Query 178044 AGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 178103
||| ||| | | | | |||||| || || ||| | | || ||||||| || ||||
Sbjct 106 AGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATTGT 47
Query 178104 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAC 178143
||||| || ||||||||||| || |||||||| || |||
Sbjct 46 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq248150
Length=2497
Score = 93.3 bits (102), Expect = 5e-14
Identities = 106/143 (74%), Gaps = 7/143 (5%)
Strand=Plus/Plus
Query 17786 CTTTAGCTCAGCTGGATAGAGCAGGGTTTTTGTAAAGCTCAGGTCACCCGTTCAAGTCGG 17845
|| |||||||||||| ||||||| || || ||| || ||||| |||||||||
Sbjct 122 CTGTAGCTCAGCTGGTTAGAGCACCGTGTTGATAACGCGGGGGTCAGTGGTTCAAGTCCA 181
Query 17846 GTAAGTGGCTCCA-------GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGC 17898
| || | ||| |||| |||||||||||||||||||||||| ||||| ||
Sbjct 182 CTTAGACCCACCATTTATATGGGGCCATAGCTCAGTTGGTAGAGCGCCTGCCTTGCACGC 241
Query 17899 AGGATGTCAGCGGTTCGAGTCCG 17921
|||| |||| |||||||| ||||
Sbjct 242 AGGAGGTCAACGGTTCGACTCCG 264
>seq126115
Length=32928
Score = 82.4 bits (90), Expect = 9e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 157420 GTCTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAA 157479
|||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 15137 GTCTCAATAGCTCAGCTGGATAGAGCAACGCCCTTCTAAGGCGTCGGTCGGGGGTTCGAA 15078
Query 157480 TCC 157482
|||
Sbjct 15077 TCC 15075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594315325244480
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