Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq28607 623 1e-173 seq218717 129 7e-25 seq249645 93.3 5e-14 >seq28607 Length=83266 Score = 623 bits (690), Expect = 1e-173 Identities = 734/993 (74%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| ||||| |||||| || ||||| || | || ||||| || || || Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| | ||| || ||||| ||||| | |||||| Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | || || ||||| Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || || ||||| || | || |||| || || ||| | || || || || ||| Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | ||||||||| | |||||||| ||||||| |||| |||| Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | ||||| | | || | | ||| |||||||||||||||||| | | ||| Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| ||||| || || | ||| Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || ||||||| |||| ||||| || ||||| | ||||||||| || ||| Sbjct 1082 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1023 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| ||| | || ||||| |||||||||||||| || |||||||| Sbjct 1022 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 963 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | ||||| || || || || || || || || ||||| || ||||| ||| Sbjct 962 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 903 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | | || ||||| ||| | || | |||||||| || || || || || | ||| Sbjct 902 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 843 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||| || || Sbjct 842 TACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 783 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || ||||||||||||| ||| |||||||| || ||||| | || |||||| | || Sbjct 782 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 723 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || ||||| || || || || ||||| || ||| | ||| | ||| ||||| |||||| Sbjct 722 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAAC 663 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 || || |||||||| |||||||| || | | ||| |||| || ||||| | || || Sbjct 662 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 603 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || || | ||||||||| ||||| |||||||| ||||| || ||||||||| Sbjct 602 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 543 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTGCTGAG 170344 |||||||||||||| ||||| ||||||| |||| Sbjct 542 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510 Score = 529 bits (586), Expect = 2e-145 Identities = 722/1008 (72%), Gaps = 0/1008 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || |||||||| || | || | Sbjct 32414 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32473 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| | || | || || ||| | || || || || ||||| || | Sbjct 32474 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32533 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| || || ||| | || ||||| || | |||||| ||||| | || || || | Sbjct 32534 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCG 32593 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 32594 TTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32653 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || ||||| || |||| ||| | || || || ||| |||||| || ||||||| Sbjct 32654 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32713 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGA 170964 | || || || | |||||||| ||| | || || |||||| | ||| ||| Sbjct 32714 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 32773 Query 170965 TTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC 171024 | |||| || ||||||||||| ||||||||||| || ||||| ||||| || |||| Sbjct 32774 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCC 32833 Query 171025 TCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAA 171084 | || ||||| || || || || |||||||||| || ||| ||||| || || || | Sbjct 32834 TAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 32893 Query 171085 TCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATA 171144 | || || ||| | ||||| | ||||| || || || |||||| |||| |||||||||| Sbjct 32894 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 32953 Query 171145 TGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAG 171204 ||||||| || || ||| | || |||| || |||| | || |||||||||| ||| | Sbjct 32954 TGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTG 33013 Query 171205 TAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGA 171264 |||| |||||||| | ||||||||||||| ||||| || || || ||| || | | Sbjct 33014 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 33073 Query 171265 CTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTG 171324 |||| | ||||| || ||||| |||||||| ||||| || || ||||| || || |||| Sbjct 33074 CTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTG 33133 Query 171325 GTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGG 171384 | | || || |||||| |||||||| |||||||||||| | ||||| || || | | Sbjct 33134 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTG 33193 Query 171385 GTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATT 171444 || | ||| | ||| ||| || | | || || ||| | || || | || ||||| | Sbjct 33194 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACT 33253 Query 171445 TCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGA 171504 |||| ||||| || | ||||| |||||||| || || ||||| |||||||| || | Sbjct 33254 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAA 33313 Query 171505 ACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAA 171564 | || || || || |||||| ||||||| |||||||| | ||| || || ||||||| Sbjct 33314 ATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 33373 Query 171565 ACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 || || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 33374 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33421 >seq218717 Length=448 Score = 129 bits (142), Expect = 7e-25 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 169678 TTACATGGGTCGTGAGTGGGAA-TTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTG 169736 ||| ||| |||||||||||||| || ||| ||||||||||||| |||||||| || Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTAT-GTCTGGGTATGCGTCCTTGGATTGTTG 169 Query 169737 TTGCTTACTCTGCTCCCGTT-GCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGG 169795 |||| || || ||||| ||| || || || | ||||||| || | || || |||| Sbjct 168 TTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGT 109 Query 169796 CAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTG 169855 ||||| || | | | | ||||||||| || ||||| | || || |||| || | Sbjct 108 CAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATT 49 Query 169856 GTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCAC 169897 || ||||| |||||||||||||| || |||||||| || ||| Sbjct 48 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7 >seq249645 Length=476466 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 161240 GTCAACATCCTGGAAGGAATCCGTTTCTATGTTTCTTTTGCTTGCAGTTTTGCTTTTGGT 161299 |||||| |||| |||| || ||||||||||| || ||||||||| ||||| |||| | Sbjct 268785 GTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCT 268844 Query 161300 GAGCTCAAACTCATGGAGGGGTCAGCAAAGATCATTTCCCTTATCGCCCGTGATGAGTCA 161359 |||| |||| | ||||| || || || |||||| || ||||| |||||||| | Sbjct 268845 GAGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAGCTCATCGCTCGTGATGAAGCG 268904 Query 161360 CAGCATCTGGTACTGACCCAGAAGAT-CTTGAAGAAGTGGGCAGACG---GTGATGATCC 161415 | |||| || | || ||| | || || | || ||| ||| |||| ||||| Sbjct 268905 CTGCATTTGACAGGTACGCAGCATATGCTAAACCTCATGCGCA-ACGGTCGTGACGATCC 268963 Query 161416 TGAGATGCAGCAGATTGCAGCAGA 161439 ||||||| ||||||| ||||| Sbjct 268964 TGAGATGGTCGAGATTGCCGCAGA 268987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590220250074560