Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031944.1
Length=185102
Score E
Sequences producing significant alignments: (Bits) Value
seq28607 623 1e-173
seq218717 129 7e-25
seq249645 93.3 5e-14
>seq28607
Length=83266
Score = 623 bits (690), Expect = 1e-173
Identities = 734/993 (74%), Gaps = 0/993 (0%)
Strand=Plus/Minus
Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411
|||||||||||| ||||| |||||| || ||||| || | || ||||| || || ||
Sbjct 1502 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 1443
Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471
|||||||| | | || | ||||| | ||| || ||||| ||||| | ||||||
Sbjct 1442 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1383
Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531
|| || || || || || || || ||||| ||| |||| ||||| | || || |||||
Sbjct 1382 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1323
Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591
|| || || ||||| || | || |||| || || ||| | || || || || |||
Sbjct 1322 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1263
Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651
|||||||| ||| | ||||||||| | |||||||| ||||||| |||| ||||
Sbjct 1262 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 1203
Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711
| ||||| | | || | | ||| |||||||||||||||||| | | |||
Sbjct 1202 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1143
Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771
||||||||||| |||||||| |||||| || || ||||| ||||| || || | |||
Sbjct 1142 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 1083
Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831
|||||| || ||||||| |||| ||||| || ||||| | ||||||||| || |||
Sbjct 1082 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 1023
Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891
|| || || || |||| ||| | || ||||| |||||||||||||| || ||||||||
Sbjct 1022 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 963
Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951
|| |||||| | ||||| || || || || || || || || ||||| || ||||| |||
Sbjct 962 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 903
Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011
| | || ||||| ||| | || | |||||||| || || || || || | |||
Sbjct 902 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 843
Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071
||||| ||||| ||||||||||| || |||||||| || || ||||| ||||| || ||
Sbjct 842 TACAAATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 783
Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131
|| ||||||||||||| ||| |||||||| || ||||| | || |||||| | ||
Sbjct 782 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 723
Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191
|| ||||| || || || || ||||| || ||| | ||| | ||| ||||| ||||||
Sbjct 722 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACCATGGCTTTCAAC 663
Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251
|| || |||||||| |||||||| || | | ||| |||| || ||||| | || ||
Sbjct 662 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 603
Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311
||||| || || | ||||||||| ||||| |||||||| ||||| || |||||||||
Sbjct 602 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 543
Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTGCTGAG 170344
|||||||||||||| ||||| ||||||| ||||
Sbjct 542 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 510
Score = 529 bits (586), Expect = 2e-145
Identities = 722/1008 (72%), Gaps = 0/1008 (0%)
Strand=Plus/Plus
Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664
||||||||||| | | || || || || ||||| || |||||||| || | || |
Sbjct 32414 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 32473
Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724
|||| ||| ||| | || | || || ||| | || || || || ||||| || |
Sbjct 32474 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 32533
Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784
|||| || || ||| | || ||||| || | |||||| ||||| | || || || |
Sbjct 32534 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCG 32593
Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844
| || || |||||| || | | | |||||| | | |||| ||||||||||| | |
Sbjct 32594 TTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 32653
Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904
| || ||||| || |||| ||| | || || || ||| |||||| || |||||||
Sbjct 32654 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACG 32713
Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGA 170964
| || || || | |||||||| ||| | || || |||||| | ||| |||
Sbjct 32714 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT 32773
Query 170965 TTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC 171024
| |||| || ||||||||||| ||||||||||| || ||||| ||||| || ||||
Sbjct 32774 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCC 32833
Query 171025 TCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAA 171084
| || ||||| || || || || |||||||||| || ||| ||||| || || || |
Sbjct 32834 TAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTA 32893
Query 171085 TCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATA 171144
| || || ||| | ||||| | ||||| || || || |||||| |||| ||||||||||
Sbjct 32894 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATA 32953
Query 171145 TGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAG 171204
||||||| || || ||| | || |||| || |||| | || |||||||||| ||| |
Sbjct 32954 TGATGGGAGTCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTG 33013
Query 171205 TAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGA 171264
|||| |||||||| | ||||||||||||| ||||| || || || ||| || | |
Sbjct 33014 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 33073
Query 171265 CTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTG 171324
|||| | ||||| || ||||| |||||||| ||||| || || ||||| || || ||||
Sbjct 33074 CTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTG 33133
Query 171325 GTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGG 171384
| | || || |||||| |||||||| |||||||||||| | ||||| || || | |
Sbjct 33134 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTG 33193
Query 171385 GTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATT 171444
|| | ||| | ||| ||| || | | || || ||| | || || | || ||||| |
Sbjct 33194 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACT 33253
Query 171445 TCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGA 171504
|||| ||||| || | ||||| |||||||| || || ||||| |||||||| || |
Sbjct 33254 TCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAA 33313
Query 171505 ACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAA 171564
| || || || || |||||| ||||||| |||||||| | ||| || || |||||||
Sbjct 33314 ATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 33373
Query 171565 ACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612
|| || | ||||| ||||| |||||||| ||||| || || |||| ||
Sbjct 33374 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33421
>seq218717
Length=448
Score = 129 bits (142), Expect = 7e-25
Identities = 164/222 (74%), Gaps = 3/222 (1%)
Strand=Plus/Minus
Query 169678 TTACATGGGTCGTGAGTGGGAA-TTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTG 169736
||| ||| |||||||||||||| || ||| ||||||||||||| |||||||| ||
Sbjct 227 TTATATGAGTCGTGAGTGGGAACTTAGTTTAT-GTCTGGGTATGCGTCCTTGGATTGTTG 169
Query 169737 TTGCTTACTCTGCTCCCGTT-GCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGG 169795
|||| || || ||||| ||| || || || | ||||||| || | || || ||||
Sbjct 168 TTGCATATTCAGCTCCTGTTTGCAGCTGCTATTGTTGTTTTCTTGATTTATCCAATTGGT 109
Query 169796 CAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTG 169855
||||| || | | | | ||||||||| || ||||| | || || |||| || |
Sbjct 108 CAAGGAAGTTTTTTTAATGGTATGCCTCTAGGAATCTCTTGTACTTTCAACTTTATTATT 49
Query 169856 GTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCAC 169897
|| ||||| |||||||||||||| || |||||||| || |||
Sbjct 48 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCAC 7
>seq249645
Length=476466
Score = 93.3 bits (102), Expect = 5e-14
Identities = 145/204 (71%), Gaps = 5/204 (2%)
Strand=Plus/Plus
Query 161240 GTCAACATCCTGGAAGGAATCCGTTTCTATGTTTCTTTTGCTTGCAGTTTTGCTTTTGGT 161299
|||||| |||| |||| || ||||||||||| || ||||||||| ||||| |||| |
Sbjct 268785 GTCAACGTCCTAGAAGCCATTCGTTTCTATGTCTCGTTTGCTTGCTCGTTTGCGTTTGCT 268844
Query 161300 GAGCTCAAACTCATGGAGGGGTCAGCAAAGATCATTTCCCTTATCGCCCGTGATGAGTCA 161359
|||| |||| | ||||| || || || |||||| || ||||| |||||||| |
Sbjct 268845 GAGCGCAAATTGATGGAAGGTAATGCCAAAATCATTAAGCTCATCGCTCGTGATGAAGCG 268904
Query 161360 CAGCATCTGGTACTGACCCAGAAGAT-CTTGAAGAAGTGGGCAGACG---GTGATGATCC 161415
| |||| || | || ||| | || || | || ||| ||| |||| |||||
Sbjct 268905 CTGCATTTGACAGGTACGCAGCATATGCTAAACCTCATGCGCA-ACGGTCGTGACGATCC 268963
Query 161416 TGAGATGCAGCAGATTGCAGCAGA 161439
||||||| ||||||| |||||
Sbjct 268964 TGAGATGGTCGAGATTGCCGCAGA 268987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590220250074560
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