Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq26661 122 8e-23 seq153189 107 2e-18 seq210337 104 2e-17 seq117562 82.4 7e-11 >seq26661 Length=2801 Score = 122 bits (134), Expect = 8e-23 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| ||||| || |||||||||||||||||||||| Sbjct 2084 CCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCC 2025 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || ||||| || || ||||| ||||||| ||| Sbjct 2024 AGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1965 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || |||||| ||| | || |||| ||| | | | ||||| ||| ||| Sbjct 1964 ATACCTTCTTTGTCC-TGAATCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCT---CTC 1909 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || ||||| |||| ||||| ||||| || ||||| Sbjct 1908 CACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1858 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| ||||| ||||||||||||||| ||||| | | ||| || |||| || Sbjct 1610 ACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTTCGGCCGTCTTCA 1551 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| |||||||| |||| | ||| || |||| |||| | ||||||||| || Sbjct 1550 AGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCC-TG 1492 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCACCTCCACCGTTATCGTTT 41831 | || |||| ||| | || | ||| || | || || |||| || || || | Sbjct 1491 GATCTTGGCTTTCACGTTGTCA-ATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCT 1433 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| ||||| || || |||||||| Sbjct 1432 TGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1402 >seq153189 Length=17048 Score = 107 bits (118), Expect = 2e-18 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||||||||| |||| || |||||| |||||||| || || | Sbjct 14735 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14676 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || ||||| | || |||||||| || || ||||| || || ||||| |||||| | ||| Sbjct 14675 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14616 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| || | || || | ||| | | | ||||| ||| || Sbjct 14615 ATCCCT-TCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCT---CT 14561 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | || || || ||||| |||| || || ||||| |||||||| Sbjct 14560 CCACCTCGAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || ||||||||||||||| ||||||| Sbjct 14507 CCACCACGAAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCC 14448 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | ||||| |||||||| |||| | ||| || |||| ||| Sbjct 14447 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 14388 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||||| || | || |||| ||| | | | ||||| ||| || Sbjct 14387 ATACCTTCCTTGTCC-TGGATCTTGGCTTTAACATTGTCGATCGTGTCCGAGCT---TTC 14332 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || ||||| ||||| |||||||| Sbjct 14331 CACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281 Score = 104 bits (114), Expect = 2e-17 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||||||||| |||| || |||||| |||||||| || || | Sbjct 14963 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14904 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || ||||| | || |||||||| || || ||||| || || ||||| |||||| | ||| Sbjct 14903 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14844 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| || | || || | ||| | | | ||||| ||| || Sbjct 14843 ATCCCT-TCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 14789 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || | || || || || || || || ||||| |||||||||||||| Sbjct 14788 CGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737 >seq210337 Length=1863 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || ||||||||||||||| || |||| Sbjct 586 CCTCCACGAAGACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 645 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || ||||||||||| || ||||| || || | || || |||| || Sbjct 646 AAAGTCCGACCATCCTCGAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGG 705 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||||||||| ||| || |||| || | | | ||||| ||| ||| Sbjct 706 ATACCTTCCTTGTCCTGGATCTTAGCCTTC-ACATTGTCAATCGTGTCTGAGCT---CTC 761 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || |||||||| || || ||||| |||||||||||||| Sbjct 762 CACCTCAAGAGTAATGGTTTTACCGGTAAGGGTCTTCACGAAAATCTGCAT 812 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || ||||||||| ||||| ||||| | Sbjct 814 CCACCACGAAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCC 873 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || | |||||| ||||| || || || | ||| ||||||| || Sbjct 874 AGGGTGCGTCCATCTTCTAACTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGG 933 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | | ||| |||||| ||| || |||| || || | |||| |||| || Sbjct 934 ATTCCCTCTTTGTCCTGGATCTTG-GCTTTGACATTATCAATGGTGTCTGAGCTC---TC 989 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || ||||| || || || ||||| || || |||||||| Sbjct 990 CACCTCCAAAGTGATGGTTTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 1040 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||||||||| | | ||| || | || || || || || |||||||| Sbjct 1533 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAA 1592 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| || || || |||| |||| | ||||||||| || | ||||| | ||| Sbjct 1593 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCC-TGGATCTTTGCCTTGACGT 1651 Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | | | ||||| ||| ||| ||||| | ||||| || || || || ||||| | Sbjct 1652 TGTCGATGGTGTCAGAGCT---CTCGACCTCGAGAGTTATGGTCTTTCCAGTAAGCGTTT 1708 Query 41847 TTACGAAAATCTGCAT 41862 | ||||| || ||||| Sbjct 1709 TCACGAATATTTGCAT 1724 >seq117562 Length=2070 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||||||||| | | ||| || | || || ||||| || |||||||| Sbjct 1194 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 1135 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| || || || |||| |||| | ||||||||| || | ||||| | ||| Sbjct 1134 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCC-TGGATCTTTGCCTTGACGT 1076 Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | | | ||||| ||| ||| ||||| | ||||| || || || || || || | Sbjct 1075 TGTCGATGGTGTCAGAGCT---CTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTT 1019 Query 41847 TTACGAAAATCTGCAT 41862 | ||||| || ||||| Sbjct 1018 TCACGAATATTTGCAT 1003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460759742833600