Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq26661 122 8e-23
seq153189 107 2e-18
seq210337 104 2e-17
seq117562 82.4 7e-11
>seq26661
Length=2801
Score = 122 bits (134), Expect = 8e-23
Identities = 168/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| || |||| ||||| || ||||||||||||||||||||||
Sbjct 2084 CCACCACGGAGACGCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTATAGTCGGCC 2025
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| || ||||| || || ||||| ||||||| |||
Sbjct 2024 AGTGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 1965
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | || |||||| ||| | || |||| ||| | | | ||||| ||| |||
Sbjct 1964 ATACCTTCTTTGTCC-TGAATCTTAGCTTTCACGTTGTCGATGGTGTCTGAGCT---CTC 1909
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| | || || || ||||| |||| ||||| ||||| || |||||
Sbjct 1908 CACCTCAAGGGTAATAGTCTTACCAGTCAAGGTCTTCACGAAGATTTGCAT 1858
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|| ||||| ||||| ||||||||||||||| ||||| | | ||| || |||| ||
Sbjct 1610 ACGAGATGAAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTTCGGCCGTCTTCA 1551
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|| ||||| |||||||| |||| | ||| || |||| |||| | ||||||||| ||
Sbjct 1550 AGTTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGAATACCTTCCTTGTCC-TG 1492
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCACCTCCACCGTTATCGTTT 41831
| || |||| ||| | || | ||| || | || || |||| || || || |
Sbjct 1491 GATCTTGGCTTTCACGTTGTCA-ATTGTGTCTGAGCTTTCAACTTCCAAAGTAATGGTCT 1433
Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| ||||||| ||||| || || ||||||||
Sbjct 1432 TGCCCGTCAAGGTCTTGACAAAGATCTGCAT 1402
>seq153189
Length=17048
Score = 107 bits (118), Expect = 2e-18
Identities = 167/232 (72%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||||||||| |||| || |||||| |||||||| || || |
Sbjct 14735 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14676
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
|| ||||| | || |||||||| || || ||||| || || ||||| |||||| | |||
Sbjct 14675 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14616
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || ||||||||| || | || || | ||| | | | ||||| ||| ||
Sbjct 14615 ATCCCT-TCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCTGAGCT---CT 14561
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| | || || || ||||| |||| || || ||||| ||||||||
Sbjct 14560 CCACCTCGAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509
Score = 104 bits (114), Expect = 2e-17
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||||| || || || ||||||||||||||| |||||||
Sbjct 14507 CCACCACGAAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCC 14448
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || | ||||| |||||||| |||| | ||| || |||| |||
Sbjct 14447 AAGGTGCGTCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTCTGCTGATCCGGAGGA 14388
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||||||| || | || |||| ||| | | | ||||| ||| ||
Sbjct 14387 ATACCTTCCTTGTCC-TGGATCTTGGCTTTAACATTGTCGATCGTGTCCGAGCT---TTC 14332
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 14331 CACCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14281
Score = 104 bits (114), Expect = 2e-17
Identities = 166/232 (72%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||||||||||| |||| || |||||| |||||||| || || |
Sbjct 14963 CCACCACGGAGACGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCA 14904
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
|| ||||| | || |||||||| || || ||||| || || ||||| |||||| | |||
Sbjct 14903 AGTGTGCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 14844
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810
| | || ||||||||| || | || || | ||| | | | ||||| ||| ||
Sbjct 14843 ATCCCT-TCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCT---CT 14789
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || || | || || || || || || || ||||| ||||||||||||||
Sbjct 14788 CGACTTCAAGGGTGATTGTCTTGCCAGTAAGAGTCTTGACGAAAATCTGCAT 14737
>seq210337
Length=1863
Score = 104 bits (114), Expect = 2e-17
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| ||||| || || || || ||||||||||||||| || ||||
Sbjct 586 CCTCCACGAAGACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCGGCC 645
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| || || | || ||||||||||| || ||||| || || | || || |||| ||
Sbjct 646 AAAGTCCGACCATCCTCGAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGG 705
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | ||||||||| ||| || |||| || | | | ||||| ||| |||
Sbjct 706 ATACCTTCCTTGTCCTGGATCTTAGCCTTC-ACATTGTCAATCGTGTCTGAGCT---CTC 761
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| | || || |||||||| || || ||||| ||||||||||||||
Sbjct 762 CACCTCAAGAGTAATGGTTTTACCGGTAAGGGTCTTCACGAAAATCTGCAT 812
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||| ||||| || || ||||||||| ||||| ||||| |
Sbjct 814 CCACCACGAAGACGAAGCACAAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCC 873
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || | |||||| ||||| || || || | ||| ||||||| ||
Sbjct 874 AGGGTGCGTCCATCTTCTAACTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGTGGG 933
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811
| | ||| |||||| ||| || |||| || || | |||| |||| ||
Sbjct 934 ATTCCCTCTTTGTCCTGGATCTTG-GCTTTGACATTATCAATGGTGTCTGAGCTC---TC 989
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||||| || || ||||| || || || ||||| || || ||||||||
Sbjct 990 CACCTCCAAAGTGATGGTTTTTCCGGTAAGGGTCTTGACAAAGATCTGCAT 1040
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||||||||| | | ||| || | || || || || || ||||||||
Sbjct 1533 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGTTGTTTACCGGCGAA 1592
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|||| || || || |||| |||| | ||||||||| || | ||||| | |||
Sbjct 1593 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCC-TGGATCTTTGCCTTGACGT 1651
Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846
| | | ||||| ||| ||| ||||| | ||||| || || || || ||||| |
Sbjct 1652 TGTCGATGGTGTCAGAGCT---CTCGACCTCGAGAGTTATGGTCTTTCCAGTAAGCGTTT 1708
Query 41847 TTACGAAAATCTGCAT 41862
| ||||| || |||||
Sbjct 1709 TCACGAATATTTGCAT 1724
>seq117562
Length=2070
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||||||||| | | ||| || | || || ||||| || ||||||||
Sbjct 1194 CTCCTTCTGGATGTTATAGTCAGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAA 1135
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|||| || || || |||| |||| | ||||||||| || | ||||| | |||
Sbjct 1134 GATCAATCGTTGCTGATCCGGAGGAATCCCTTCCTTGTCC-TGGATCTTTGCCTTGACGT 1076
Query 41791 CGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846
| | | ||||| ||| ||| ||||| | ||||| || || || || || || |
Sbjct 1075 TGTCGATGGTGTCAGAGCT---CTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTT 1019
Query 41847 TTACGAAAATCTGCAT 41862
| ||||| || |||||
Sbjct 1018 TCACGAATATTTGCAT 1003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 460759742833600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |