Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 129 7e-25 seq3 102 1e-16 >seq6 Length=112752717 Score = 129 bits (142), Expect = 7e-25 Identities = 409/625 (65%), Gaps = 12/625 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || || || |||| || || ||||| || | Sbjct 97172205 ACAGCAAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGA 97172264 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | || ||||||| ||||||||||| ||||||||||| || ||| | | | || Sbjct 97172265 AGGTTAAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCGA-GCAGAAGCTCCCG 97172323 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304 || ||||| || ||||| || || || || | | | | ||| | || || Sbjct 97172324 GAGAAGAAGATCCCTTCGACGCAGGCGAACGCGACGATGCGT--TCCGCGAACGATTCTG 97172381 Query 24305 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | ||| ||||| | | ||||| || || ||||| ||||||||||| | ||||| | Sbjct 97172382 AGCCATCGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAA 97172441 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGA 24422 | || | |||||| || || || | | | ||||| | || || || | | || Sbjct 97172442 TTGCGTGGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGG 97172500 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| || || || ||||| || || || || || || |||||||| | ||| Sbjct 97172501 CTGTACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCC 97172560 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| | ||| || || | || | | | || | ||| || || || ||||| Sbjct 97172561 TCGGCGACCTGAACCTCCTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCG 97172620 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGTT 24600 || || || || || | || || | ||||| | ||| | |||| || | Sbjct 97172621 GATGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGAT 97172680 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | ||| | ||| || || | || ||||| ||| ||||||| || ||||||| Sbjct 97172681 --TCCCAGTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCT 97172738 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 | || || || ||||| | ||| || ||| | ||||| ||||| || || ||||| | Sbjct 97172739 CCGCTTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGT 97172798 Query 24721 TTGGATTTTTTGCAAGGATTGGTTC 24745 || ||| ||||||| ||| || Sbjct 97172799 CAGGGTTTGGAGCAAGGAGTGGCTC 97172823 >seq3 Length=135057546 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | ||| | || | | ||| |||| |||||| Sbjct 112999539 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACCCGTAGCATAGGAAGAATACC 112999480 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || ||| ||||| ||| |||||||||| || || || Sbjct 112999479 ATTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGA 112999420 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || |||||||| ||| ||| | || || || || |||||||| || Sbjct 112999419 AACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATAT 112999360 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||||||||||||||| |||| Sbjct 112999359 TCCCTCTATACTATCATCTTTCAT 112999336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| ||||| || | || || ||||| || || |||||| ||| ||| | | | Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| || || ||| || ||||| || | ||| |||||||| || || || | ||| | Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCA 112999055 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 |||||||||| || ||||| || | ||| | | |||| | |||||| | |||| Sbjct 112999054 ACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCA 112998995 Query 54603 AAGTTTTAAAACCAAAATA 54621 |||||||||||||| || Sbjct 112998994 GGGTTTTAAAACCAAAGTA 112998976 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 53924 TCTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 |||||||| || || |||| ||| | ||||| || || |||||| || |||| | Sbjct 113000037 TCTCTTTCATACTTATTGTA--CAACCTCTCAAATTCTTCACCCCAACAATCTGCCAAAC 112999980 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | || |||| ||||| | ||| ||||| ||||| | | || |||| || ||||| Sbjct 112999979 CTGGTGCCTCATTGGGACAAAACAAAGACCATTCTCCATTAGACTGAACTCTTTCCATAA 112999920 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 54078 |||||||||| | |||||| || |||||||||||| Sbjct 112999919 AGAGATCAGGCACCCAAAGTGCATAAAATAGATCTCT 112999883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710415769360