Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 136 6e-27 seq6 96.9 5e-15 seq9 86.0 9e-12 seq5 84.2 3e-11 >seq3 Length=135057546 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||||||||| || || || ||||| | ||| | ||| | Sbjct 22723053 ATGCAAATCTTTGTCAAGACACTAACCGGAAAGACAATAACCCTGGAGGTCGAATCTTCG 22722994 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| ||||| ||||| ||||| ||||| ||||||||||| Sbjct 22722993 GACACAATTGACAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 22722934 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || || || || |||||| | | || | | ||||| || Sbjct 22722933 CAGAGACTTATCTTTGCTGGTAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAAC 22722874 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || |||||| | ||||| || | |||||||| || Sbjct 22722873 ATTCAGAAGGAGTCCACCTTGCATCTTGTTTTGCGACTCCGAGGTGGAAT 22722824 Score = 136 bits (150), Expect = 6e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || ||||| || || || | ||| | ||| Sbjct 22723737 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAGACCATCACCCTTGAGGTGGAAAGTTCC 22723678 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || |||||||| ||||||||||| || || ||||| || Sbjct 22723677 GATACAATTGATAATGTCAAGGCCAAAATTCAGGATAAAGAAGGAATCCCTCCTGACCAG 22723618 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| ||||||||| | || ||| || |||| | | ||||| || Sbjct 22723617 CAAAGGCTTATTTTTGCCGGAAAACAACTTGAAGATGGTAGAACCCTTGCCGATTACAAC 22723558 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||||| || | || ||||| | |||||| ||||||| || ||| || Sbjct 22723557 ATTCAGAAGGAATCCACACTCCACTTGGTGCTTCGTTTAAGAGGTGGCATGCAAATTT 22723500 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| | || || || || || ||| | ||| ||||| Sbjct 22722826 AATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACAATCACTTTGGAGGTTGAAAGTTC 22722767 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| |||| | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 22722766 TGATACAATTGATAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATCCCTCCGGATCA 22722707 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || |||||||| || || | || ||| | || || | | ||||| || Sbjct 22722706 GCAGAGGCTCATCTTTGCAGGGAAGCAGCTTGAAGATGGCCGTACTCTTGCTGATTACAA 22722647 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||||||||||||||| | | | || |||||||| ||| || Sbjct 22722646 CATACAAAAGGAATCTACTTTGCATTTGGTTCTGAGGCTCCGTGGTGGTATGCAAATTT 22722588 >seq6 Length=112752717 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| || || || |||||| | ||| ||||| | Sbjct 25200207 ATGCAGATCTTTGTGAAAACCCTAACGGGAAAGACCATAACTCTCGAGGTTGAATCTTCG 25200148 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || || ||||||||||||||||| || || ||||||||| Sbjct 25200147 GACACAATAGACAACGTGAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 25200088 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || || ||||||||||| | | || | | ||||| || Sbjct 25200087 CAGCGACTCATCTTCGCTGGGAAGCAATTAGAGGACGGGAGGACGCTTGCTGATTACAAC 25200028 Query 124719 ATTCAAAAAGAATCAACTTTGCAT-TTGGTTTTACGTT 124755 || || || || || || |||||| ||| | ||| ||| Sbjct 25200027 ATACAGAAGGAGTCGACGTTGCATCTTGTTCTTAGGTT 25199990 >seq9 Length=120672674 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || ||||| || || | ||| | || ||| Sbjct 111905258 ATGCAGATCTTTGTGAAGACCCTTACCGGAAAAACCATCACCCTTGAGGTAGAGAGCTCC 111905199 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || || || ||||| ||||| || || || || || Sbjct 111905198 -GACACCATTGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCA 111905140 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | |||||| | || || || | ||||| || Sbjct 111905139 GCAAAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAA 111905080 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || ||||| | || | || || ||| | || ||||| || Sbjct 111905079 TATCCAGAAGGAGTCAACCCTCCACCTTGTGTTGCGTCTCCGTGGTGGCAT 111905029 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| || || || ||||| || || | ||| | || ||| Sbjct 111905486 ATGCAGATCTTTGTAAAGACCCTTACCGGAAAAACCATCACCCTTGAGGTAGAGAGCTCC 111905427 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| || || ||||| ||||| || || || || || Sbjct 111905426 -GACACCATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCA 111905368 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| || || || || || | |||||| | || || || | ||||| || Sbjct 111905367 GCAAAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAA 111905308 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || || | || ||||| || || | || ||||| || Sbjct 111905307 TATCCAGAAGGAGTCCACACTCCACTTGGTCTTGCGGCTTCGTGGTGGCAT 111905257 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || ||||| || || | ||| | || ||| Sbjct 111941589 ATGCAGATCTTTGTGAAGACCCTTACCGGAAAAACCATCACCCTTGAGGTAGAGAGCTCC 111941530 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || || || ||||| ||||| || || || || || Sbjct 111941529 -GACACCATTGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCA 111941471 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | |||||| | || || || | ||||| || Sbjct 111941470 GCAAAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAA 111941411 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || ||||| | || | || || ||| | || ||||| || Sbjct 111941410 TATCCAGAAGGAGTCAACCCTCCACCTTGTGTTGCGTCTCCGTGGTGGCAT 111941360 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| || || || ||||| || || | ||| | || ||| Sbjct 111941817 ATGCAGATCTTTGTAAAGACCCTTACCGGAAAAACCATCACCCTTGAGGTAGAGAGCTCC 111941758 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| || || ||||| ||||| || || || || || Sbjct 111941757 -GACACCATTGACAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCA 111941699 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| || || || || || | |||||| | || || || | ||||| || Sbjct 111941698 GCAAAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAA 111941639 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || || | || ||||| || || | || ||||| || Sbjct 111941638 TATCCAGAAGGAGTCCACACTCCACTTGGTCTTGCGGCTTCGTGGTGGCAT 111941588 >seq5 Length=110037037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||| ||||| || ||||| ||||| ||| | || || || || ||||| Sbjct 20101499 AAAATTCAAGATAAGGAAGGGATCCCACCGGATCAGCAACGTCTGATCTTCGCCGGAAAG 20101440 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | ||||| | || || || | || || || || || || ||||| || | || Sbjct 20101439 CAACTCGAGGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAATCCACCCTCCAC 20101380 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||| | ||| | || |||||||| Sbjct 20101379 CTCGTTCTCCGTCTCCGTGGTGGTAT 20101354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755441769097600