Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 seq3 107 3e-18 >seq6 Length=112752717 Score = 120 bits (132), Expect = 4e-22 Identities = 407/625 (65%), Gaps = 12/625 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || || || |||| || || ||||| || | Sbjct 97172205 ACAGCAAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGA 97172264 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || | || ||||||| ||||||||||| ||||||||||| || ||| | | | || Sbjct 97172265 AGGTTAAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCGA-GCAGAAGCTCCCG 97172323 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327 || ||||| || ||||| || || || || | | | ||| | || || Sbjct 97172324 GAGAAGAAGATCCCTTCGACGCAGGCGAACGC--GACGATGCGTTCCGCGAACGATTCTG 97172381 Query 36328 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | ||| ||||| | | ||||| || || ||||| ||||||||||| | ||||| | Sbjct 97172382 AGCCATCGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAA 97172441 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGA 36445 | || | |||||| || || || | | | ||||| | || || || | | || Sbjct 97172442 TTGCGTGGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGG 97172500 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || ||||| || || || ||||| || || || || || || |||||||| | ||| Sbjct 97172501 CTGTACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCC 97172560 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 |||| | ||| || || | || | | | || | ||| || || || ||||| Sbjct 97172561 TCGGCGACCTGAACCTCCTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCG 97172620 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG--TTTGGTGTTAGTT 36623 || || || || || | || || | ||||| | ||| | |||| || | Sbjct 97172621 GATGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGAT 97172680 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | ||| | ||| || || | || ||||| ||| ||||||| || ||||||| Sbjct 97172681 --TCCCAGTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCT 97172738 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 | || || || ||||| | ||| || ||| | ||||| ||||| || || ||||| | Sbjct 97172739 CCGCTTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGT 97172798 Query 36744 TTTGATTTTTTGCAAGGATTGGTTC 36768 | ||| ||||||| ||| || Sbjct 97172799 CAGGGTTTGGAGCAAGGAGTGGCTC 97172823 >seq3 Length=135057546 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | ||| || | ||| | || | | ||| |||| |||||| Sbjct 112999539 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACCCGTAGCATAGGAAGAATACC 112999480 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || ||| ||||| ||| | |||||||| || || || Sbjct 112999479 ATTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGA 112999420 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||||||||| ||| ||| | || || || || |||||||| || Sbjct 112999419 AACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATAT 112999360 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||||||||||||||| |||| Sbjct 112999359 TCCCTCTATACTATCATCTTTCAT 112999336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| ||||| || | || || ||||| || || |||||| ||| ||| | | | Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | ||| || ||||| || | ||| |||||||| || || || | ||| | Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCA 112999055 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||||||||| || ||||| || | ||| | | ||||| | |||||| | |||| Sbjct 112999054 ACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCA 112998995 Query 66634 AAGTTTTAAAACCAAAATA 66652 |||||||||||||| || Sbjct 112998994 GGGTTTTAAAACCAAAGTA 112998976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658160401669880