Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq5 87.8 2e-12 >seq6 Length=112752717 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | ||| | ||| | ||| ||||| ||||||||||| |||||| Sbjct 25200208 GCCGCCGCGAAGACGGAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCGGC 25200267 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || |||||||| || || |||| || || |||||||||||||| Sbjct 25200268 GAGGGTGCGACCATCCTCTAGCTGTTTCCCGGCGAAGATGAGTCGCTGCTGATCGGGAGG 25200327 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | || | | || | |||||||| || || | Sbjct 25200328 AATGCCTTCTTTGTC-TTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAA 25200386 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||| ||||| | ||||| ||||| || ||||| Sbjct 25200387 CCTCCAGAGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 25200435 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | ||| ||||| || || || ||||| ||| Sbjct 25200436 GCCGCCACGGAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATATTATAGTCGGC 25200495 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||||||| || || || |||| ||||| ||||| || || || Sbjct 25200496 AAGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 25200555 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | || |||| || |||||| Sbjct 25200556 GATGCCTTCCTTGTCTTGGATCTTAGCCTTCACATTGTCGATGGTATCGGAGGACTCCAC 25200615 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||| || || | ||||| ||||| || |||||| Sbjct 25200616 CTCCAAGGTAATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATA 25200664 >seq5 Length=110037037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| || ||||| || ||||| |||||| | ||||| ||| || ||||| || || Sbjct 23423240 CGTGGATTCTTTCTGGATGTTGTAATCGGCGAGTGTGCGGCCGTCCTCAAGCTGCTTTCC 23423181 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || || ||||| || || || || ||||||||||| ||| || || Sbjct 23423180 GGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCTTCTTTGTCTTGGATCTTGGCCTT 23423121 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | |||||||||| ||| | ||||| || || | || Sbjct 23423120 CACGTTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGT 23423061 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 23423060 TTTCACGAAAATCTGCAT 23423043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||| | || || || || || ||||| || ||| | Sbjct 20101357 CCACCACGGAGACGGAGAACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 20101416 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| ||||| || || || || ||||||||||||||||||| || || Sbjct 20101417 AAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGATCCGGTGGG 20101476 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| |||||| || | | || | ||||||| ||| || Sbjct 20101477 ATCCCTTCCTTATC-TTGAATTTTTGCCTTGACGTTATCGATGGTGTCGGAACTCTCGAC 20101535 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || || | || || ||||| |||||||| Sbjct 20101536 CTCGAGAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 20101583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496054655394400