Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 105 7e-18 seq6 100 3e-16 seq5 86.0 6e-12 >seq3 Length=135057546 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| |||||| | || || || | ||| ||||| || || |||||||||||| Sbjct 22723510 GCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGC 22723569 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||| |||||||| || ||| | || || | |||||| || ||||| Sbjct 22723570 AAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATAAGCCTTTGCTGGTCAGGAGG 22723629 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || |||||| || | | || | || || | ||| || Sbjct 22723630 GATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCAC 22723689 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| ||||| ||||| ||||| |||||||| Sbjct 22723690 CTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 22723737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||||||| | ||| | || || || || || ||||||||||| Sbjct 22722827 CCACCTCGGAGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCA 22722886 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || | || ||||||||| |||| || | |||||||| || || Sbjct 22722887 AGGGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGATCAGGTGGG 22722946 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| |||||| ||| | | || | ||||||| | ||| || Sbjct 22722947 ATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTGTCAATTGTGTCCGAAGATTCGACC 22723006 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| | ||| || || || |||||||| Sbjct 22723007 TCCAGGGTTATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 22723053 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| |||| ||||| | || || |||| || || || || || ||||||||||| || Sbjct 22723282 GCCACCTCTCAAACGGAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTGC 22723341 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | ||| || || || || || || |||||| | |||| | ||||| || || | Sbjct 22723342 T-AGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTG 22723400 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || |||||||| ||||| ||| | | || | ||||||| || ||| | Sbjct 22723401 GGATACCCTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATGGTGTCCGAGGATTCCA 22723460 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | || || || ||||| || |||||||| |||||||| Sbjct 22723461 CCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTTACGAAAATTTGCAT 22723509 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 || ||| ||||| | |||||||| ||||||||||||||||| | || | || Sbjct 22722613 CAGAACCAAATGCAAAGTAGATTCCTTTTGTATGTTGTAATCAGCAAGAGTACGGCCATC 22722672 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| || || || || ||| |||| || | |||||||| ||||| || || |||||||| Sbjct 22722673 TTCAAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGAGGGATACCCTCTTTGTC 22722732 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || || | | || | || || | ||| || || | ||| | || Sbjct 22722733 CTGAATCTTCGCCTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAAAGTGATTGT 22722792 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| |||||||| || || || || |||||||| Sbjct 22722793 CTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 22722825 >seq6 Length=112752717 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | || | || || || ||||| |||||||||||| Sbjct 25200208 GCCGCCGCGAAGACGGAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCGGC 25200267 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || || || ||||| || || |||| || || |||||||||||||| Sbjct 25200268 GAGGGTGCGACCATCCTCTAGCTGTTTCCCGGCGAAGATGAGTCGCTGCTGATCGGGAGG 25200327 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||| || || | | || | ||||| | || ||| || Sbjct 25200328 AATGCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAAC 25200387 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| ||||| | ||||| ||||| || ||||| Sbjct 25200388 CTCCAGAGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 25200435 >seq5 Length=110037037 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||| || |||| ||| |||||||| || || Sbjct 20101387 GTGGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCG 20101446 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||||||||||||||| || || || ||||| || || ||||||| || Sbjct 20101447 GCGAAGATCAGACGTTGCTGATCCGGTGGGATCCCTTCCTTATCTTGAATTTTTGCCTTG 20101506 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || || | ||| | ||||| || || | || Sbjct 20101507 ACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGAGTGATGGTCTTTCCAGTGAGGGTC 20101566 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 20101567 TTCACGAAGATTTGCAT 20101583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507004849116240