Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 122 6e-23 seq6 95.1 9e-15 seq5 86.0 5e-12 seq9 82.4 6e-11 >seq3 Length=135057546 Score = 122 bits (134), Expect = 6e-23 Identities = 174/244 (71%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| || | | || || || || ||||| || || || |||||||||||| Sbjct 22723509 TGCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGG 22723568 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | ||||| | |||||| || || | || | | ||| ||||| | Sbjct 22723569 CAAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATAAGCCTTTGCTGGTCAGGAG 22723628 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||||||||| || ||||||| ||| ||| | || || |||||| | |||| | Sbjct 22723629 GGATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCA 22723688 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT-TTGAAAAT 15373 | || | ||| ||||| || || |||| ||||| || || |||||||| | || |||| Sbjct 22723689 CCTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCATCTGTTCAAAAC 22723748 Query 15374 AAAA 15377 |||| Sbjct 22723749 AAAA 22723752 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | | || || ||||| || || || || || ||||||||||| Sbjct 22723281 TGCCACCTCTCAAACGGAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTG 22723340 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || | || || ||||| | ||||| | || ||||| || Sbjct 22723341 CTAGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTG 22723400 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || |||||||| |||||| || ||| | || ||||| || ||| | Sbjct 22723401 GGATACCCTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATGGTGTCCGAGGATTCCA 22723460 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||||||| |||||||| || |||| || ||||| ||||||||||| Sbjct 22723461 CCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTTACGAAAATTTGCAT 22723509 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCG--CGTCTTCTAA 15216 ||| ||||| || || ||||| || || || || ||| ||| || | || || || Sbjct 22722394 ATGGAGGGTCGATTCCTTTTGGATATTATAGTCTGCT---AATGTACGACCATCCTCCAA 22722450 Query 15217 TTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT 15276 |||||||||||| | || | | || || ||| ||||| || || ||||| ||| Sbjct 22722451 TTGTTTGCCAGCAAAGATGAGCCTCTGCTGATCGGGGGGAATACCCTCCTTGTCCTGAAT 22722510 Query 15277 TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACC 15336 || ||| ||| | || |||||||| |||| || || || |||||||| || || Sbjct 22722511 CTTCGCCTTCACATTATCAATGGTATCAGAGCTTTCGACCTCCAAAGTAATGGTCTTCCC 22722570 Query 15337 TGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || ||||||||||||||| Sbjct 22722571 CGTCAGGGTCTTCACAAAAATTTGCATA 22722598 >seq6 Length=112752717 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | ||| || | ||| | ||| | || || || || |||||||||||||| Sbjct 25199981 CCTCCACGCAACCTAAGAACAAGATGCAACGTCGACTCCTTCTGTATGTTGTAATCAGCA 25200040 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| |||| |||||||| || |||||| | || | || ||||| || || Sbjct 25200041 AGCGTCCTCCCGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGG 25200100 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||| ||| ||| || | ||||| || || | ||| || Sbjct 25200101 ATTCCTTCTTTATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACC 25200160 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 25200161 TCGAGAGTTATGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 25200207 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| |||||||| || ||||| |||||||||||| ||| | | |||| || Sbjct 25199772 AACAAGATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGAGTGCGTCCGTCCTC 25199831 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || ||||| | || | ||| || ||||| |||||| || || |||| Sbjct 25199832 AAGCTGCTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGTGGAATCCC--CTCTGTCCTG 25199889 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||| ||| ||| | || || ||||| | | || || |||| || || || | Sbjct 25199890 TATCTTTGC-CTTCACATTATCAATAGTATCAGAACTCTCCACCTCTAGCGTTATCGTCT 25199948 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| || || ||||| ||||| Sbjct 25199949 TCCCGGTTAGAGTCTTCACGAAAATCTGCAT 25199979 >seq5 Length=110037037 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||| || |||||||||||| || | | |||| || | || Sbjct 23423246 ATGGAGCGTGGATTCTTTCTGGATGTTGTAATCGGCGAGTGTGCGGCCGTCCTCAAGCTG 23423187 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | || | || || ||||| || |||||||||||||| || || Sbjct 23423186 CTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCTTCTTTGTCTTGGATCTT 23423127 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||| | ||| || || | ||| ||||| || || || Sbjct 23423126 GGCCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTCCCCGT 23423067 Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || ||||| ||||| || Sbjct 23423066 TAGGGTTTTCACGAAAATCTGCATTTT 23423040 >seq9 Length=120672674 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||| || || || | || | ||||| || || Sbjct 111904600 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTCCTTCCATCTTCCAACTGC 111904659 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||| | || ||||| ||| || ||||| || || ||| || Sbjct 111904660 TTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGAATCTTA 111904719 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| | || || || ||||| ||||| ||||| ||| Sbjct 111904720 GCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTACCGGTC 111904779 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || |||||||| ||||| Sbjct 111904780 AAAGTCTTCACAAAAATCTGCAT 111904802 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | || | || || | || Sbjct 111904828 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCAAGCTGC 111904887 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | ||| ||||| |||||| || || || || ||| ||| Sbjct 111904888 TTACCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATGCCCTCCTTATCTTGAATCTTG 111904947 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| | | || || || | || ||||| || || || Sbjct 111904948 GCCTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCAAGAGTGATGGTCTTTCCGGTG 111905007 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 111905008 AGGGTCTTAACAAAAATCTGCAT 111905030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||| || || || | || | ||||| || || Sbjct 111940931 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTCCTTCCATCTTCCAACTGC 111940990 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||| | || ||||| ||| || ||||| || || ||| || Sbjct 111940991 TTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGAATCTTA 111941050 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| | || || || ||||| ||||| ||||| ||| Sbjct 111941051 GCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTACCGGTC 111941110 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || |||||||| ||||| Sbjct 111941111 AAAGTCTTCACAAAAATCTGCAT 111941133 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | || | || || | || Sbjct 111941159 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCAAGCTGC 111941218 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | ||| ||||| |||||| || || || || ||| ||| Sbjct 111941219 TTACCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATGCCCTCCTTATCTTGAATCTTG 111941278 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| | | || || || | || ||||| || || || Sbjct 111941279 GCCTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCAAGAGTGATGGTCTTTCCGGTG 111941338 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 111941339 AGGGTCTTAACAAAAATCTGCAT 111941361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362172548013087