Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq5 82.4 6e-11 >seq3 Length=135057546 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| || || || |||||||| |||||||||||||| || | || | | || Sbjct 22723070 AACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGCAAGCGTCCTTCCATCT 22723129 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| ||||| ||| | || || ||||||||||| || | |||||| ||||| Sbjct 22723130 TCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCC 22723189 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | | ||||| | ||| || | || ||||| Sbjct 22723190 TGAATCTTAGCTTTCACATTGTCAATGGTATCAGAGGATTCCACCTCTAGTGTTATGGTC 22723249 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| ||||| ||||||||||| ||||| Sbjct 22723250 TTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 22723281 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| | | || || | ||||| || |||||||| ||||| |||||||| | Sbjct 22722825 TTCCACCTCGGAGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCAG 22722884 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||| ||| ||||| ||| | ||||||||||||||||| | Sbjct 22722885 CAAGGGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGATCAGGTG 22722944 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| ||||| ||| || | | | | || || || || Sbjct 22722945 GGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTGTCAATTGTGTCCGAAGATTCGA 22723004 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || |||| || |||||||| |||||||| Sbjct 22723005 CCTCCAGGGTTATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 22723053 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | ||| |||||||| ||||| |||||||| || Sbjct 22723283 CCACCTCTCAAACGGAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTGCT 22723342 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| ||||| || || ||| |||| | |||||||| || || Sbjct 22723343 AGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 22723402 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | ||||||||||| ||||| ||| || | | | | || || | ||| ||| Sbjct 22723403 ATACCCTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATGGTGTC-CGAGGATTCCAC 22723461 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || || || || || ||||||||||| Sbjct 22723462 CTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTTACGAAAATTTGCAT 22723509 >seq5 Length=110037037 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| |||||||||||||| || | || | | || || Sbjct 20100462 CACAAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCTTC 20100521 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| || || || | || | |||||||| ||| ||| | ||||| ||||| Sbjct 20100522 CAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTG 20100581 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | || ||| |||| || | ||||||||| || Sbjct 20100582 AATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCAAGGGTAATGGTCTT 20100641 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| || |||||||| ||||| Sbjct 20100642 CCCAGTCAAAGTCTTAACAAAAATCTGCAT 20100671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414565185722758