Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 4e-13 seq3 86.0 4e-12 >seq9 Length=120672674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || |||||||| ||||||| ||||||||| | || | |||||| | Sbjct 111904646 CATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCT 111904705 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || || || | ||| || || | |||||| || | || | Sbjct 111904706 TATCCTGAATCTTAGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGA 111904765 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || |||||||| |||||||||||||| || ||||| Sbjct 111904766 TGGTCTTACCGGTCAAAGTCTTCACAAAAATCTGCAT 111904802 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || |||||||| ||||||| ||||||||| | || | |||||| | Sbjct 111940977 CATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCT 111941036 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || || || | ||| || || | |||||| || | || | Sbjct 111941037 TATCCTGAATCTTAGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGA 111941096 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || |||||||| |||||||||||||| || ||||| Sbjct 111941097 TGGTCTTACCGGTCAAAGTCTTCACAAAAATCTGCAT 111941133 >seq3 Length=135057546 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | | |||||| || || ||| || || ||||| || |||||| Sbjct 22723511 CCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGCA 22723570 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | ||||||||| ||||| || | || ||||||||| |||| Sbjct 22723571 AGGGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATAAGCCTTTGCTGGTCAGGAGGG 22723630 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| |||||| ||||| || ||| ||||| | ||||| Sbjct 22723631 ATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCACC 22723690 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || || || ||||| || |||||||| Sbjct 22723691 TCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 22723737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771083955036