Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq8 89.7 4e-13 seq7 84.2 2e-11 >seq3 Length=135057546 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| | | |||||| || ||||| ||||| || || |||||||||||| | Sbjct 22723511 CCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGCA 22723570 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| | |||||| || ||| |||||||||| || || || || Sbjct 22723571 AGGGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATAAGCCTTTGCTGGTCAGGAGGG 22723630 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| || || | ||| | |||| | |||| Sbjct 22723631 ATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCACC 22723690 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| ||||| ||||| ||||| || || |||||||| Sbjct 22723691 TCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 22723737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||||| |||||||| | |||||||| ||||||||||||||||| | Sbjct 22722599 CCACCACGGAGCCTCAGAACCAAATGCAAAGTAGATTCCTTTTGTATGTTGTAATCAGCA 22722658 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||| | || || || ||| | || |||||||| ||||| || Sbjct 22722659 AGAGTACGGCCATCTTCAAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGAGGG 22722718 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| ||| || ||||| | ||| | ||| | ||| Sbjct 22722719 ATACCCTCTTTGTCCTGAATCTTCGCCTTCACATTATCAATTGTATCAGAACTTTCAACC 22722778 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || || || || |||||||| || |||||||| ||||||||| Sbjct 22722779 TCCAAAGTGATTGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCATT 22722826 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | || |||||||||||||| || || || || || || |||||||| | Sbjct 22723055 CCACCACGGAGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGCA 22723114 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | |||||| | || || || ||| | || |||||||| ||||| || Sbjct 22723115 AGCGTCCTTCCATCTTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGA 22723174 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| || ||||| ||| || |||||| | | ||| | ||| | |||| Sbjct 22723175 ATGCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCAGAGGATTCCACC 22723234 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || ||||| || || ||||| || ||||||||||| ||||| Sbjct 22723235 TCTAGTGTTATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 22723281 >seq8 Length=49462234 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| ||||| || ||||| || || |||||||| Sbjct 6061620 TTTGATCATGGTTCCTCCCCTGAGCCTCAAAACCAAGTGAAGTGTCGACTCCTTTTGTAT 6061679 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||||||||| | | ||| |||||||| ||| ||||||||| | || |||||||| Sbjct 6061680 GTTGTAATCCGCAAGAGTGCGCCCATCTTCCAGTTGCTTGCCCGCAAAGATCAGCCTCTG 6061739 Query 20089 TTGATC 20094 || || Sbjct 6061740 CTGGTC 6061745 >seq7 Length=79126724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||| | | |||||| ||||| || ||||| || || |||||||| Sbjct 37588230 TTTGATCATGGTTCCTCCCCTGAGCCTCAAAACCAAGTGAAGTGTCGACTCCTTTTGTAT 37588171 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 |||||| ||| | | ||| |||||||| || ||||||||| | || |||||||| Sbjct 37588170 GTTGTAGTCGGCAAGAGTGCGCCCATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTG 37588111 Query 20089 TTGATC 20094 || || Sbjct 37588110 CTGGTC 37588105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419579493625467