Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq6 98.7 8e-16 seq9 91.5 1e-13 seq3 89.7 4e-13 seq5 87.8 2e-12 >seq4 Length=123556382 Score = 102 bits (112), Expect = 7e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || || | || |||||||||||||||| ||| || | Sbjct 120131235 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 120131294 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| || | | |||||||||| ||| || ||| | | | Sbjct 120131295 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTG 120131354 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || ||||| |||| ||||||| ||| | || ||||| || || || || ||||||| Sbjct 120131355 TCG--ATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 120131412 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 120131413 CGAAGATCTGCATC 120131426 >seq6 Length=112752717 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | ||| || ||| ||||||||||||||||||||| || Sbjct 25199754 ACCGCCACGGAGCCTGAGAACAAGATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGC 25199813 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || ||||||| |||||||| || | | |||| ||||||||| ||| | Sbjct 25199814 CAGAGTG-CGTCCGTCCTCAAGCTGCTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGTG 25199872 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | || ||||| || || ||| | | | || ||||| | | |||| Sbjct 25199873 GAATCCCCTC--TGTCCTGTATCTTTGCCTTCACATTATCAATAGTATCAGAACTCTCCA 25199930 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | ||||| || || ||||| ||||| ||||| |||||||||||| Sbjct 25199931 CCTCTAGCGTTATCGTCTTCCCGGTTAGAGTCTTCACGAAAATCTGCATC 25199980 >seq9 Length=120672674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| ||||||||||||||||| || ||| || ||||| ||||| Sbjct 111904828 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGGGTCCTTCCATCCTCAAGCTG 111904886 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | |||| || | ||||| ||| || | | ||||| || ||| || Sbjct 111904887 CTTACCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATGCCCTCCTTATCTTGAATCTT 111904946 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || |||| | |||| ||| | || ||||| || ||||| Sbjct 111904947 GGCCTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCAAGAGTGATGGTCTTTCCGGT 111905006 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || |||||||||||||| Sbjct 111905007 GAGGGTCTTAACAAAAATCTGCAT 111905030 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| ||||||||||||||||| || ||| || ||||| ||||| Sbjct 111941159 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGC-AAGGGTCCTTCCATCCTCAAGCTG 111941217 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | |||| || | ||||| ||| || | | ||||| || ||| || Sbjct 111941218 CTTACCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATGCCCTCCTTATCTTGAATCTT 111941277 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || |||| | |||| ||| | || ||||| || ||||| Sbjct 111941278 GGCCTTCACATTGTCAATTGTGTCGGAACTCTCCACCTCAAGAGTGATGGTCTTTCCGGT 111941337 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || |||||||||||||| Sbjct 111941338 GAGGGTCTTAACAAAAATCTGCAT 111941361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| |||||||| || ||||| || ||| || || |||| ||| Sbjct 111904600 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGC-AAGGGTCCTTCCATCTTCCAACTG 111904658 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| ||| || | || |||||| ||| ||| || Sbjct 111904659 CTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGAATCTT 111904718 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || |||| |||| ||| | || ||||| |||||||| Sbjct 111904719 AGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTACCGGT 111904778 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | ||| |||||||||||||||||| Sbjct 111904779 CAAAGTCTTCACAAAAATCTGCATC 111904803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| |||||||| || ||||| || ||| || || |||| ||| Sbjct 111940931 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGC-AAGGGTCCTTCCATCTTCCAACTG 111940989 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| ||| || | || |||||| ||| ||| || Sbjct 111940990 CTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGAATCTT 111941049 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || |||| |||| ||| | || ||||| |||||||| Sbjct 111941050 AGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTACCGGT 111941109 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | ||| |||||||||||||||||| Sbjct 111941110 CAAAGTCTTCACAAAAATCTGCATC 111941134 >seq3 Length=135057546 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573 ||||| ||||| | ||| |||||| ||||| |||||||| || || ||| || || Sbjct 22723070 AACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGC-AAGCGTCCTTCCATC 22723128 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 || |||||||||||| | | || | | ||||||||| || | | |||||||| Sbjct 22723129 TTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTC 22723188 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || || | | | |||||||| | || ||| ||| | ||||||||| Sbjct 22723189 CTGAATCTTAGCTTTCACATTGTCAATGGTATCAGAGGATTCCACCTCTAGTGTTATGGT 22723248 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||| || |||||||||||||| Sbjct 22723249 CTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 22723281 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || || || || || | ||||||||||| Sbjct 124959903 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTACGGCCATCCTCCAGCTG 124959961 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || | |||| ||||||||| || || | | |||||| || |||||| Sbjct 124959962 TTTTCCGGCGAAGATTAGACGCTGCTGGTCGGGAGGGATCCCTTCCTTATCTTGAATTTT 124960021 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | ||||| || | | ||| ||||| || ||||| || ||||| Sbjct 124960022 CGCCTTCACATTATCGATGGTGTCAGAACTCTCGACCTCGAGAGTAATGGTCTTTCCGGT 124960081 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || || || || |||||| Sbjct 124960082 GAGGGTCTTGACGAAGATTTGCATC 124960106 >seq5 Length=110037037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | | || || | ||| || ||| || || || ||||||||||| || Sbjct 23423269 CCGCCGCGGAGGCGTAGGACGAGATGGAGCGTGGATTCTTTCTGGATGTTGTAATCGGCG 23423210 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | | || ||||||| |||||||| ||| || | || | |||||||| ||| ||| Sbjct 23423209 AGTGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 23423150 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||| ||||| || || ||| | | | || ||||| |||| ||| ||| Sbjct 23423149 ATTCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAAGATTCCA 23423092 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || |||||||| ||||||||||| Sbjct 23423091 CCTCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCAT 23423043 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| ||||| ||||||||||| || ||| || || |||| ||| Sbjct 20100469 TGAAGAGTGGACTCCTTCTGAATATTGTAATCAGC-AAGGGTCCTTCCATCTTCCAACTG 20100527 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || || | |||||| ||| || | | ||||||||| ||| || Sbjct 20100528 CTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGAATCTT 20100587 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | ||||| |||| |||| ||| | || ||||| || || || Sbjct 20100588 GGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCAAGGGTAATGGTCTTCCCAGT 20100647 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| || |||||||||||||| Sbjct 20100648 CAAAGTCTTAACAAAAATCTGCAT 20100671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421243463063507