Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq3 91.5 2e-13 >seq6 Length=112752717 Score = 150 bits (166), Expect = 2e-31 Identities = 412/619 (67%), Gaps = 14/619 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || || || |||| || | ||||| || | Sbjct 97172205 ACAGCAAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGA 97172264 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | || ||||||| ||||||||||| ||||||||||| || ||| || | Sbjct 97172265 AGGTTAAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGG 97172324 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33473 | |||||||| ||||| || ||| || || || | | | ||| | || || Sbjct 97172325 AGAAGAAGATCCCTTCGAC-GCAGGCGAACGC--GACGATGCGTTCCGCGAACGATTCTG 97172381 Query 33474 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | ||| ||||| | | ||||| || || ||||| ||||||||||| | || || | Sbjct 97172382 AGCCATCGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAA 97172441 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGA 33591 | || | |||||| || || || | | | ||||| | ||||| |||| | || Sbjct 97172442 TTGCGTGGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGG 97172500 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 || ||||| || || || ||||| || || || ||||| || |||||||| | ||| Sbjct 97172501 CTGTACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCC 97172560 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAA-ATTTTCATTCACTATTCCGTC 33710 |||| | ||| || || | || | | ||||| ||| ||| || || || ||||| Sbjct 97172561 TCGGCGACCTGAACCTC-CTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTC 97172619 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGT 33768 || || || || || | || || | ||||| | ||| | |||| || Sbjct 97172620 GGATGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGA 97172679 Query 33769 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 | | ||| | ||| || || | || ||||| ||| ||||||| || |||||| Sbjct 97172680 T--TCCCAGTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCC 97172737 Query 33829 TCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTA 33888 || || || || ||||| | ||| || ||| |||||||||||||| || ||||| Sbjct 97172738 TCCGCTTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTG 97172797 Query 33889 TTTGGATTTGGTGCAAGGA 33907 | || ||||| ||||||| Sbjct 97172798 TCAGGGTTTGGAGCAAGGA 97172816 >seq3 Length=135057546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| ||||| || | || || ||||| || || |||||| ||| ||| | | | Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| || | ||| || ||||| || | ||| |||||||| || || || | ||| | Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCA 112999055 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||||||| || ||||| || | ||| | | ||||| | |||||| | |||| Sbjct 112999054 ACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCA 112998995 Query 63790 AAGTTTTAAAACCAAAATA 63808 |||||||||||||| || Sbjct 112998994 GGGTTTTAAAACCAAAGTA 112998976 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| || | ||| | || | | ||| |||| |||||| Sbjct 112999539 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACCCGTAGCATAGGAAGAATACC 112999480 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||| ||||| ||| |||||||||| || || || Sbjct 112999479 ATTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGA 112999420 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||||||||| ||| ||| | || || || || || ||||| || Sbjct 112999419 AACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATAT 112999360 Query 63551 ACCCTCTATGCTATCATCGATCAT 63574 |||||||| |||||||| |||| Sbjct 112999359 TCCCTCTATACTATCATCTTTCAT 112999336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935465232120