Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 129 7e-25 seq3 111 2e-19 >seq6 Length=112752717 Score = 129 bits (142), Expect = 7e-25 Identities = 409/625 (65%), Gaps = 12/625 (2%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||||||||| || || || |||| || || ||||| || | Sbjct 97172205 ACAGCAAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGA 97172264 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | || ||||||| ||||||||||| ||||||||||| || ||| | | | || Sbjct 97172265 AGGTTAAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCGA-GCAGAAGCTCCCG 97172323 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 32830 || ||||| || ||||| || || || || | | | ||| | || || Sbjct 97172324 GAGAAGAAGATCCCTTCGACGCAGGCGAACGC--GACGATGCGTTCCGCGAACGATTCTG 97172381 Query 32831 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 | ||| ||||| | | ||||| || || ||||| ||||||||||| | ||||| | Sbjct 97172382 AGCCATCGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAA 97172441 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGA 32948 | || | |||||| || || || | | | ||||| | || || || | | || Sbjct 97172442 TTGCGTGGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGG 97172500 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 || ||||| || || || ||||| || || || || || || ||||||||| | ||| Sbjct 97172501 CTGTACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCC 97172560 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| | ||| || || | || | | | || | ||| || || || ||||| Sbjct 97172561 TCGGCGACCTGAACCTCCTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCG 97172620 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGTT 33126 || || || || || | || || | ||||| | ||| | |||| || | Sbjct 97172621 GATGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGAT 97172680 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | ||| | ||| || || | || ||||| ||| ||||||| || ||||||| Sbjct 97172681 --TCCCAGTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCT 97172738 Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 33246 | || || || ||||| | ||| || ||| | ||||| ||||| || || ||||| | Sbjct 97172739 CCGCTTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGT 97172798 Query 33247 TTGGATTTTTTGCAAGGATTGGTTC 33271 || ||| ||||||| ||| || Sbjct 97172799 CAGGGTTTGGAGCAAGGAGTGGCTC 97172823 >seq3 Length=135057546 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| || | ||| | || | | ||| |||| |||||| Sbjct 112999539 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACCCGTAGCATAGGAAGAATACC 112999480 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| || || ||| ||||| ||| |||||||||| || || || Sbjct 112999479 ATTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGA 112999420 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||||||||| ||| ||| | || || || || |||||||| || Sbjct 112999419 AACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATAT 112999360 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 ||||||||||||||||| |||| Sbjct 112999359 TCCCTCTATACTATCATCTTTCAT 112999336 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| ||||| || | || || ||||| ||||| |||||| ||| ||| | | | Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | ||| || ||||| || | ||| |||||||| || || || | ||| | Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCA 112999055 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||||||||| || ||||| || | ||| | | ||||| | |||||| | |||| Sbjct 112999054 ACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCA 112998995 Query 63645 AAGTTTTAAAACCAAAATA 63663 |||||||||||||| || Sbjct 112998994 GGGTTTTAAAACCAAAGTA 112998976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633620063957200