Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8 102 2e-16 seq3 102 2e-16 seq10 93.3 9e-14 seq6 93.3 9e-14 seq5 93.3 9e-14 seq1 93.3 9e-14 seq7 91.5 3e-13 seq4 87.8 4e-12 seq2 87.8 4e-12 >seq8 Length=49462234 Score = 102 bits (112), Expect = 2e-16 Identities = 197/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||| || |||| ||||| || || ||||| || ||| | | | || |||||| Sbjct 39231422 GACTTTGTCAACAAAGAGCTGATACTGTTCTCCAGGGCAGATCTTCAAAGGTCCATTCCC 39231363 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 |||| |||||||||||||| || | ||||| || || | |||| ||| Sbjct 39231362 TCGATGGTTGATGGCCTCAAGCCTGGACAAAGGAAGATTCTTTTCTGCTCATTTAAGAAA 39231303 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || | ||||||| || || | || ||| |||||||||||| || |||| Sbjct 39231302 AAGTTGTTCAAAGAAATAAAAGTGGGCCAATTTATTGGTTATGTATCTGAGCACTCTGCT 39231243 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 || || || |||||||| ||||| | | || | || ||||||||||| | ||| Sbjct 39231242 TATCACCATGGTGAGCAAAGTCTTGCTAGCACAATAATTGGAATGGCACAGGATTTCGTG 39231183 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||||| |||||||| || | || || || ||||| || ||| ||||| Sbjct 39231182 GGCAGCAACAACATCAATCTTCTTAAACCGAATGGTCAATTCGGTACTCGT 39231132 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 12846576 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12846635 Query 142564 CCCAC 142568 ||||| Sbjct 12846636 CCCAC 12846640 >seq3 Length=135057546 Score = 102 bits (112), Expect = 2e-16 Identities = 197/291 (68%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||| | ||||| ||||| || || ||||| || ||| | | | || |||||| Sbjct 10064569 GACTTTGTTGACAAAGAGCTAATACTCTTCTCCAGGGCAGATCTCCAAAGGTCCATTCCC 10064628 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || | |||||||||||||| || | ||||| || ||| | |||| || | Sbjct 10064629 TCGATGATTGATGGCCTCAAGCCCAGTCAAAGGAAGATTCTTTTTTGCTCATTTAAAAAG 10064688 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || ||||||| || || || ||||| ||||||||| || || || | Sbjct 10064689 AAGTTGACCAAAGAAATAAAAGTAGCCCAGTTCATTGGTTATGTGTCTGAGCAGTCAGCA 10064748 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||| || || ||||| ||||| | |||| | || ||||||||||| | ||| Sbjct 10064749 TACCACCATGGAGAGCAAAGTCTTGCTAGCACCATCATCGGAATGGCACAGGATTTTGTT 10064808 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||||| |||||||| ||| | || || || ||||| |||||| | ||| Sbjct 10064809 GGCAGCAACAACATTAACCTTCTTAAACCAAATGGTCAATTTGGTACACGT 10064859 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1658719 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1658778 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| |||| ||||| Sbjct 1658779 CCCCACGGTGGGC-GAAGT 1658796 >seq10 Length=109463236 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 19309726 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 19309785 Query 142563 CCCCAC 142568 |||||| Sbjct 19309786 CCCCAC 19309791 >seq6 Length=112752717 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 11408464 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11408405 Query 142563 CCCCAC 142568 |||||| Sbjct 11408404 CCCCAC 11408399 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 100503324 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 100503265 Query 142563 CCCCAC 142568 |||||| Sbjct 100503264 CCCCAC 100503259 >seq5 Length=110037037 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 13129900 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13129959 Query 142563 CCCCAC 142568 |||||| Sbjct 13129960 CCCCAC 13129965 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 5246756 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5246815 Query 142564 CCCAC 142568 ||||| Sbjct 5246816 CCCAC 5246820 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 95156888 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 95156947 Query 142563 CCCCAC 142568 |||||| Sbjct 95156948 CCCCAC 95156953 >seq1 Length=107035537 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || |||||||||| ||||||||||||||||| Sbjct 28740935 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAATCTTGTGGTCGTGGGTTCGAG 28740876 Query 142563 CCCCAC 142568 |||||| Sbjct 28740875 CCCCAC 28740870 >seq7 Length=79126724 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 13229374 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 13229433 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 13229434 AGCCCCAC 13229441 >seq4 Length=123556382 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 105539634 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 105539575 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 105539574 AGCCCCAC 105539567 >seq2 Length=93869048 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 37380322 AGCCCGTCTAGCTCAGTCGGTAGAGCGTAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 37380263 Query 142563 CCCCAC 142568 |||||| Sbjct 37380262 CCCCAC 37380257 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 87017684 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 87017625 Query 142563 CCCCAC 142568 |||||| Sbjct 87017624 CCCCAC 87017619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027816954077387