Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 seq4 96.9 4e-15 seq3 91.5 2e-13 >seq6 Length=112752717 Score = 100 bits (110), Expect = 3e-16 Identities = 179/261 (69%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| || || || || ||||| | || ||||||||| | ||||||||| | || Sbjct 97172227 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACCTGGCATTAACCC 97172286 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| |||| ||| || |||| || || || |||||||||||||| || || || Sbjct 97172287 ACGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGATCCCTTCGACGCA 97172346 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||| | | || || || || || || ||| | ||| | || Sbjct 97172347 GGCGAACGCGACGATGCGTTCCGCGAACGATTCTGA---GCCATCGATCCATCGTAGGGC 97172403 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||||| || || |||| | ||| || ||||||| || || | ||||| ||||| Sbjct 97172404 CCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAATTGCGTGGAAGAGACGATTCTT 97172463 Query 127771 TTCTGATGGATCTTTGATGTA 127791 ||||||| ||||||||||| Sbjct 97172464 CTCTGATGAGTCTTTGATGTA 97172484 Score = 96.9 bits (106), Expect = 4e-15 Identities = 215/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG 12850 ||||||||||||||| |||| ||| || || ||||| || || | ||||| ||| || Sbjct 18233763 GAAGCCATCCATCTCCGTCAGGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCG-- 18233706 Query 12851 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | | | | || || | | ||| | || ||||| ||||| || ||||||||||| || Sbjct 18233705 CCTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATG 18233646 Query 12909 CACGGTTGATTTTCACG-GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 || || | ||| || ||| ||||| | ||| | ||| | ||||| || || Sbjct 18233645 CATGGC-GCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCC 18233587 Query 12968 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACC 13027 ||||||| |||||| || | | || | || || ||| || || || ||||| Sbjct 18233586 AACAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACC 18233527 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 || | || || || || ||||||||||| || || ||| |||| | ||||| || Sbjct 18233526 GGCAACCGCCCGTGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCC 18233467 Query 13088 ACGTGGGATCCTGGCACC 13105 ||||||| | ||||| Sbjct 18233466 TTTTGGGATCTTAGCACC 18233449 >seq4 Length=123556382 Score = 96.9 bits (106), Expect = 4e-15 Identities = 228/338 (67%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || ||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 22707504 GTCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAA 22707445 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | | Sbjct 22707444 CCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCT 22707387 Query 12854 ACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | | || | || | |||| | || || || || ||||| |||| ||||| || || Sbjct 22707386 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAA 22707327 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || || | ||||| ||||| | Sbjct 22707326 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAA 22707269 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 13028 |||||||||| ||||| | || | | | || | || ||| ||||| | ||| || Sbjct 22707268 CAAACATCTCAACAAACTCGGAACCTG-AGATGGAGAAGAATGGGACACCTGCTTCCCCT 22707210 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || || ||| | || ||||| || || ||||| Sbjct 22707209 GCAATAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGG 22707172 >seq3 Length=135057546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 227/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 |||||| || ||| | ||| || || || || || | |||||| || | ||||| Sbjct 130918719 GTCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCGAA 130918778 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC-- 12851 |||||||| || ||||| || ||||||| || ||||| | |||||||||| | Sbjct 130918779 CCCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCTCCACC 130918838 Query 12852 -ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 || ||| | | || ||| | || || || |||||||| |||| ||| || || || Sbjct 130918839 AATTCCAGTCCCTCT---TTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCA 130918895 Query 12911 CGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| || || |||| || | ||| || ||||| ||||||| ||| Sbjct 130918896 AGGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACGGACTCTTGAAGCACCGATACCA 130918953 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 ||||||||||| ||||| | | | | | |||| || ||| || || | ||| || Sbjct 130918954 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCGCC 130919012 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 ||||| || ||| | ||||||||||| || || || Sbjct 130919013 AGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 130919051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495643058120