Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq6 113 6e-20 seq3 96.9 4e-15 >seq4 Length=123556382 Score = 136 bits (150), Expect = 5e-27 Identities = 312/465 (67%), Gaps = 20/465 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || ||| | | || ||||| || ||||||| ||||| || | || || Sbjct 22707503 TCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAAC 22707444 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||||||| ||||| | || ||||| | |||||||||| || | | Sbjct 22707443 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCTC 22707386 Query 16038 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 16095 | | |||| || | |||| |||| || ||||| || ||||||| || || ||||| | Sbjct 22707385 CAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAAG 22707326 Query 16096 GTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 | ||| || || |||| || | ||| || ||||| || || |||||||| Sbjct 22707325 GAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAAC 22707268 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACAT----TG--GATGAAGGGGACATTAGATTC 16207 ||||||||| ||||| | |||||| | || || ||| |||||| | ||| Sbjct 22707267 AAACATCTCAACAAACT------CGGAACCTGAGATGGAGAAGAATGGGACACCTGCTTC 22707214 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 || ||||| || ||| | || |||||||| || ||||| ||| | || || | Sbjct 22707213 CCCTGCAATAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGGAGGACCAACAAGAAGAAC 22707154 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||| || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 22707153 TCCTTTCGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 22707094 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||| || || | ||| || | || | ||| ||||||| Sbjct 22707093 TACCTCCATAAAGTCCTGTTTAGCTTCATCCACCCCAGCAACATC 22707049 >seq6 Length=112752717 Score = 113 bits (124), Expect = 6e-20 Identities = 248/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| |||| ||||||||||| || || |||| ||||| ||| | || Sbjct 18233762 AAGCCATCCATCTCCGTCAGGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 18233705 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | ||||| | | ||| | |||||||||||||||||||||||||| || |||| Sbjct 18233704 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 18233645 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 |||| ||| || ||||| | ||||| || || || || || |||| Sbjct 18233644 ATGGCGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCAA 18233585 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 16212 |||||| |||||| || | | || | || || ||| || || | ||||| | Sbjct 18233584 CAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCGG 18233525 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 ||| || || || ||||| ||||| || || || || ||| | || || ||| Sbjct 18233524 CAACCGCCCGTGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCTT 18233465 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 ||| ||||| || || | ||| | ||||| | ||| |||||||| |||| | Sbjct 18233464 TTGGGATCTTAGCACCCAAAGCGGTGTACTTGTCAGGGTTCTTGAGAAAATCAACAACTT 18233405 Query 16333 CTTCCAATTC 16342 | | || ||| Sbjct 18233404 CCTGCAGTTC 18233395 Score = 100 bits (110), Expect = 4e-16 Identities = 172/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||||| | ||||| | || || | || ||||| ||| | | |||||||| || Sbjct 97172466 GAGAAGAATCGTCTCTTCCACGCAATTGAGACCGTTCCTTGTGTAAAGAAGAAAGCTGAG 97172407 Query 102138 TGGGC--TATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 102194 ||||| || || ||| | ||| | || ||||| || || || || |||| Sbjct 97172406 TGGGCCCTACGA--TGGATCGATGGCTCAGAATCGTTC----GCGGAACGCATCGTCGCG 97172353 Query 102195 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 102254 || || || || || || ||||||||||| || ||||||| | || | |||||| || Sbjct 97172352 TTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGGAGCTTCTGCTCGATATTTTGGCTGAAA 97172293 Query 102255 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 ||||| || | ||||||||| | |||||| |||||| | ||||| || || || || Sbjct 97172292 AAGCGTGGGTTAATGCCAGGTTTAACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGC 97172233 Query 102315 CTCCAC 102320 |||||| Sbjct 97172232 CTCCAC 97172227 >seq3 Length=135057546 Score = 96.9 bits (106), Expect = 4e-15 Identities = 230/340 (68%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || ||| | | || || || || || || | || ||||| | || || Sbjct 130918720 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCGAAC 130918779 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| |||||||||||||| || | || ||||| | |||||||||| || | Sbjct 130918780 CCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 130918836 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | | ||| | || || |||||||| ||||||| ||| || ||||| Sbjct 130918837 CCAATTCCAGTCCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCAA 130918896 Query 16095 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || ||| || ||| |||| || | ||| || || |||| || || | ||| Sbjct 130918897 GGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACG--GACTCTTGAAGCACCGATACC 130918952 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | | | |||| || ||| || ||| || ||| | Sbjct 130918953 AACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCGC 130919011 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | || || || ||| | ||| ||||| || || || || Sbjct 130919012 CAGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 130919051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620730706765040