Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25]
1,507 sequences; 1,084,261,490 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4 138 1e-27
seq6 111 2e-19
seq3 102 1e-16
>seq4
Length=123556382
Score = 138 bits (152), Expect = 1e-27
Identities = 310/463 (67%), Gaps = 16/463 (3%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || ||| | | || || || || ||||||| ||||| || | | || ||
Sbjct 22707503 TCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAAC 22707444
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
|||||||| ||||||||||||||||| | || ||||| | |||||||||| || | |
Sbjct 22707443 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCTC 22707386
Query 9345 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402
| | |||| || | |||| |||| || ||||| || ||||||| || ||||| || |
Sbjct 22707385 CAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAAG 22707326
Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462
| ||| || ||| | | || | ||| ||||| | || || ||||||||||
Sbjct 22707325 GAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAACAA 22707266
Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACAT----TG--GATGAAGGGGACATTAGATTCAC 9516
||||||| ||||| | |||||| | || || ||| |||||| | ||| |
Sbjct 22707265 ACATCTCAACAAACT------CGGAACCTGAGATGGAGAAGAATGGGACACCTGCTTCCC 22707212
Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9576
| ||||| || ||| | || |||||||| || ||||| ||| | || || | |
Sbjct 22707211 CTGCAATAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGGAGGACCAACAAGAAGAACTC 22707152
Query 9577 CCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636
| ||||| || ||| || | | |||||||| | ||| ||||| ||||| |
Sbjct 22707151 CTTTCGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACTA 22707092
Query 9637 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679
||| || || | ||| || | || | ||| |||||||
Sbjct 22707091 CCTCCATAAAGTCCTGTTTAGCTTCATCCACCCCAGCAACATC 22707049
>seq6
Length=112752717
Score = 111 bits (122), Expect = 2e-19
Identities = 250/371 (67%), Gaps = 6/371 (2%)
Strand=Plus/Minus
Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341
|| ||||||||||| |||| || |||||||| || || |||| ||||| ||| | ||
Sbjct 18233762 AAGCCATCCATCTCCGTCAGGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 18233705
Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399
| | | ||||| | | ||| | |||||||||||||||||||||||||| ||||| |
Sbjct 18233704 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 18233645
Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459
|||| ||| ||| | ||||| | ||| | || | || || || ||||
Sbjct 18233644 ATGGCGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCAA 18233585
Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519
|||||| |||||| || | | || | || || ||| || || | ||||| |
Sbjct 18233584 CAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCGG 18233525
Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578
||| || || || ||||| ||||| || || || || ||| | | || | |||||
Sbjct 18233524 CAACCGCCCGTGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCA-GAAGACACCCT 18233466
Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638
||| ||||| || || | ||| | ||||| | |||||||||||| ||||
Sbjct 18233465 TTTGGGATCTTAGCACCCAAAGCGGTGTACTTGTCAGGGTTCTTGAGAAAATCAACAACT 18233406
Query 9639 TCTTCCAATTC 9649
|| | || |||
Sbjct 18233405 TCCTGCAGTTC 18233395
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| || |||||||| || || | || || |||||| || |||||||| | ||
Sbjct 97172227 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACCTGGCATTAACCC 97172286
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
||||| |||| |||| | || | |||||| ||||||||||||||| || || || ||
Sbjct 97172287 ACGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGATCCCTTCGACGCA 97172346
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434
|| ||||| | | ||| || ||||| ||
Sbjct 97172347 GGCGAACGCGACGATGCGTTCCGCGAACGA 97172376
>seq3
Length=135057546
Score = 102 bits (112), Expect = 1e-16
Identities = 277/420 (66%), Gaps = 8/420 (2%)
Strand=Plus/Plus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || ||| | | || || || || || || | || ||||| | | || ||
Sbjct 130918720 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCGAAC 130918779
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
|||||||| ||||||||||| || || | || ||||| | |||||||||| || |
Sbjct 130918780 CCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 130918836
Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
||| |||| | | ||| | || || |||||||| ||||||| ||| ||||| ||
Sbjct 130918837 CCAATTCCAGTCCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCAA 130918896
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||| || || | | || | ||| || || ||| || || | |||||||
Sbjct 130918897 GGGGCATTCTCTTTAGCCTTCTTGAATAAATCACGGACTCTTGAAGCACCGATACCAACA 130918956
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | | | | | |||| || ||| || ||| || ||| || ||
Sbjct 130918957 AACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCGCCAGC 130919015
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580
|| || ||| | ||| ||||| || || || || || | || || |||||
Sbjct 130919016 GATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGGAGGTCCAACAAGAAGAACACCCTT 130919075
Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
||| || || ||| || | | || ||||| | ||| ||||| ||||| | |||
Sbjct 130919076 TGGTATGCGAGCTCCAACAGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCACTACCTC 130919135
Score = 98.7 bits (108), Expect = 1e-15
Identities = 163/229 (71%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || ||||| || ||||||||||| || ||||| | || ||| ||||| | |||
Sbjct 112999184 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGA 112999125
Query 107228 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286
|||||| ||| ||| | ||| || |||| || ||||| ||| ||| || || | ||
Sbjct 112999124 GACATCATGTGGTAAGTTCTGACAG-CAGATTCTATGTCATCCTTGTGAATTCCAACAGC 112999066
Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344
|| | ||| ||||||| ||||| |||||| | | || | || || || ||||
Sbjct 112999065 AACCCTCATCAACATGTGCTGGGGCCTTTCCACAACCTTTCC-TTGAACC-TTCAAGAGG 112999008
Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393
||| | |||| |||||||| | |||||||||| || | || ||||||
Sbjct 112999007 TAGGACCTCTCCAGGGTTTTAAAACCAAAGTAATCATAGTCGAAGTCCC 112998959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589969686236680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |