Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq1 95.1 1e-14 seq7 86.0 7e-12 seq6 82.4 9e-11 >seq3 Length=135057546 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || | || | || ||| || | ||||||| Sbjct 112999538 CCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACCCGTAGCATAGGAAGAATACCA 112999479 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| || || || ||| | || | || || || ||| Sbjct 112999478 TTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGAA 112999419 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| ||| || | ||||||| || | |||||||| ||| Sbjct 112999418 ACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATATT 112999359 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || ||||||||||||||| ||||| || || || |||||| Sbjct 112999358 CCCTCTATACTATCATCTTTCATACATATGAGGAAGCAACTA 112999317 >seq1 Length=107035537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| || ||||| |||||| ||| | ||||| |||||||| ||| Sbjct 97981414 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATTAGCTCATTTGAAAATGTCAAA 97981355 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAG 19057 || ||||| | |||||| ||||| | ||||||||||| Sbjct 97981354 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATAG 97981318 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 |||||||||||||| | ||||| ||||| || || || ||| | || | ||||| Sbjct 18022541 CAATACCATTTGATGTCCCATTTGTTCCACGTATGTAGCTGCCAGTGGCACAGATATTGT 18022482 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || |||| ||| || || ||||| ||| || | ||||||| || | ||| Sbjct 18022481 GAACAGAAACACCAATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTAC 18022422 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 |||| ||||| ||||||||||||||| |||||| || || || |||||| Sbjct 18022421 CATATATTCCCTCTATACTATCATCTTTCATATATATAAGGAAGCAACTA 18022372 >seq7 Length=79126724 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 |||||| ||| ||| | ||||| ||||| || || || ||| | || | |||||| Sbjct 26659415 CAATACAATTGGATGTCCCATTTGTTCCACGTATGTAGCTGCCAGTGGCACATATATTGT 26659356 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || |||| ||| || || ||||| ||| || | ||||||| || | ||| Sbjct 26659355 GAACAGAAACACCAATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTAC 26659296 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 |||| ||||| ||||||||||||||| |||||| || || || |||||| Sbjct 26659295 CATATATTCCCTCTATACTATCATCTTTCATATATATAAGGAAGCAACTA 26659246 >seq6 Length=112752717 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 |||||||||| ||| | ||||| ||||| || || || ||| | || | ||||| Sbjct 53473162 CAATACCATTGGATGTCCCATTTGTTCCATGGATGTAGCTGCCAGTGGCGCAGATATTGT 53473221 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || |||| ||| || || ||||| ||| || | ||||||| || | ||| Sbjct 53473222 GAACAGAAAAACCGATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTAC 53473281 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 |||| |||| ||||||||||||||| |||||| || || || |||||| Sbjct 53473282 CATATATTCTCTCTATACTATCATCTTTCATATATATAAGGAAGCAACTA 53473331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098211275480