Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 140 6e-28 seq6 131 3e-25 seq5 84.2 4e-11 >seq3 Length=135057546 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| || ||||| |||| || | ||| | || || ||| || Sbjct 22723501 AATTTGCATGCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTT 22723560 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | |||||| ||| || | |||||||||||||||||| | || || || Sbjct 22723561 GTAATCGGCAAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATAAGCCTTTGCTG 22723620 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 |||||||| |||||||||||||| || ||||||| || | ||| ||| |||||||| Sbjct 22723621 GTCAGGAGGGATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGA 22723680 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || || || || || | ||||| || || |||||||| Sbjct 22723681 ACTTTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 22723737 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || |||| || | || | ||| || ||| || || || Sbjct 22723280 ATGCCACCTCTCAAACGGAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCT 22723339 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | || || || |||||||| || ||||| || ||||| Sbjct 22723340 GCTAGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGT 22723399 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||||| ||| | ||| ||| || || || || || Sbjct 22723400 GGGATACCCTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATGGTGTCCGAGGATTCC 22723459 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| || || ||||| || || | || ||||| || |||||||| Sbjct 22723460 ACCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTTACGAAAATTTGCAT 22723509 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || ||||| | || | || || ||||||||||| | ||| || | | | Sbjct 22722383 CGAAGGACAAGATGGAGGGTCGATTCCTTTTGGATATTATAGTCTGCTAATGTACGACCA 22722442 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| || ||||| || | ||||| ||||| || || || || || || Sbjct 22722443 TCCTCCAATTGTTTGCCAGCAAAGATGAGCCTCTGCTGATCGGGGGGAATACCCTCCTTG 22722502 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| ||||| || || || || | ||| || Sbjct 22722503 TCCTGAATCTTCGCCTTCACATTATCAATGGTATCAGAGCTTTCGACCTCCAAAGTAATG 22722562 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| |||||||| Sbjct 22722563 GTCTTCCCCGTCAGGGTCTTCACAAAAATTTGCAT 22722597 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||||||||| || || ||||| || || || || ||||| || || ||||| || Sbjct 124959504 TGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGGATC 124959563 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| || || || ||| ||||||||| || || || || || || Sbjct 124959564 TTTGCTTTGACATTATCGATGGTGTCCGAACTCTCAACTTCCAGGGTGATTGTCTTTCCG 124959623 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || |||||| Sbjct 124959624 GTAAGGGTCTTAACGAAAATCTGCATT 124959650 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || |||| | ||| || || ||||| || ||||| |||||||| ||| Sbjct 124959960 TGTTTTCCGGCGAAGATTAGACGCTGCTGGTCGGGAGGGATCCCTTCCTTATCTTGAATT 124960019 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| || || || ||| ||| || || ||||| || || || || Sbjct 124960020 TTCGCCTTCACATTATCGATGGTGTCAGAACTCTCGACCTCGAGAGTAATGGTCTTTCCG 124960079 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || |||||||| Sbjct 124960080 GTGAGGGTCTTGACGAAGATTTGCAT 124960105 >seq6 Length=112752717 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || | ||| | ||| || |||||||| || | ||| || || || || || Sbjct 25199978 ATCCCTCCACGCAACCTAAGAACAAGATGCAACGTCGACTCCTTCTGTATGTTGTAATCA 25200037 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| || || |||||||| || || || || || | || ||||||||||||| Sbjct 25200038 GCAAGCGTCCTCCCGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGA 25200097 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || |||| || | || || || || ||||| ||| Sbjct 25200098 GGGATTCCTTCTTTATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCA 25200157 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || ||||| ||||| ||||| || ||||| Sbjct 25200158 ACCTCGAGAGTTATGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 25200207 >seq5 Length=110037037 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||| || || || || ||||||||||| ||||| || Sbjct 23423188 TGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCTTCTTTGTCTTGGATC 23423129 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | || || || |||||||| || || || || || || || || || Sbjct 23423128 TTGGCCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTCCCC 23423069 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || |||||||| Sbjct 23423068 GTTAGGGTTTTCACGAAAATCTGCATTTT 23423040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899637452760240