Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 104 3e-17 seq6 87.8 3e-12 seq5 84.2 3e-11 >seq3 Length=135057546 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || ||| |||| || ||| ||| Sbjct 22723281 ATGCAGATTTTTGTCAAGACTTTGACAGGGAAGACCATAACACTAGAGGTGGAATCCTCT 22723222 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| ||| || || || || || ||||| || ||||| || Sbjct 22723221 GATACCATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAG 22723162 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||||||||| |||||| || || | ||||||| ||| Sbjct 22723161 CAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAAGATGGAAGGACGCTTGCAGATTACAAT 22723102 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || | ||||| ||||| Sbjct 22723101 ATTCAGAAGGAGTCCACTTTACATTTGGTGTT 22723070 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || || || || || | || || ||| ||| Sbjct 22723737 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAGACCATCACCCTTGAGGTGGAAAGTTCC 22723678 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| || ||||||||||| || ||||| || || Sbjct 22723677 GATACAATTGATAATGTCAAGGCCAAAATTCAGGATAAAGAAGGAATCCCTCCTGACCAG 22723618 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| |||||| || || || |||||| ||||| | | ||||| || Sbjct 22723617 CAAAGGCTTATTTTTGCCGGAAAACAACTTGAAGATGGTAGAACCCTTGCCGATTACAAC 22723558 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || || || || ||| | | |||||||| || Sbjct 22723557 ATTCAGAAGGAATCCACACTCCACTTGGTGCTTCGTTTAAGAGGTGG 22723511 >seq6 Length=112752717 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||| ||||| ||| | |||||||||| || || || ||||| || ||| Sbjct 97172210 AAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTT 97172269 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | ||||| |||||||||||||| ||| || | || ||| Sbjct 97172270 AAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAG 97172329 Query 18275 AATATACCCTCAACGCACGCGAACGC 18300 || || || || ||||| |||||||| Sbjct 97172330 AAGATCCCTTCGACGCAGGCGAACGC 97172355 >seq5 Length=110037037 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | || ||||| || ||||| | || || || ||| Sbjct 20101127 ATGCAGATCTTTGTTAAGACCCTTACCGGAAAGACAATTACCCTTGAGGTGGAGAGCTCT 20101068 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| ||||| ||||| || || ||||| || || || || Sbjct 20101067 GACACAATCGATAATGTGAAGGCCAAAATCCAAGACAAGGAGGGCATTCCCCCGGACCAG 20101008 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||||||||||||||| ||| | | ||| | |||| || | Sbjct 20101007 CAGAGATTGATCTTCGCCGGTAAGCAGCTCGAGGATGGCCGTACTCTTGCAGACTACA-- 20100950 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| ||| | || || ||| | || || Sbjct 20100949 ACATCCAAAAGGAGTCTACCCTCCATCTTGTCTT 20100916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731858213361200