Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3 113 8e-20 seq6 104 4e-17 >seq3 Length=135057546 Score = 113 bits (124), Expect = 8e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||||| || || | ||| || || | ||| || ||| || ||||| Sbjct 22722824 ATTCCACCTCGGAGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCA 22722883 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || ||| || ||||| || ||||||||||| || | |||||| || ||||| Sbjct 22722884 GC-AAGGGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGATCAGG 22722942 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || || ||||| ||||| ||||| ||| ||||| || || || || ||||| Sbjct 22722943 TGGGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTGTCAATTGTGTCCGAAGATTC 22723002 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || |||| ||| || | || || ||||| Sbjct 22723003 GACCTCCAGGGTTATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 22723053 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || || || | || | ||| || ||| || |||||| Sbjct 22723280 ATGCCACCTCTCAAACGGAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCT 22723339 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | || || ||||||||||| || ||||| ||||||||| Sbjct 22723340 GCTAGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGT 22723399 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| ||||| ||| ||||| || || || || ||||| Sbjct 22723400 GGGATACCCTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATGGTGTCCGAGGATTCC 22723459 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || |||||||| ||||| || || || | ||| || ||||| Sbjct 22723460 ACCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTTACGAAAATTTGCAT 22723509 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || || || ||||||||||| | ||| || |||||| |||||| Sbjct 22723052 ATGCCACCACGGAGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCT 22723111 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | | || || | || ||||| ||||| || | ||||| || || ||| Sbjct 22723112 GCAAGCGTCCTTCCATCTTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGATCTGGT 22723171 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || ||| ||| ||||| || ||||| || ||||| Sbjct 22723172 GGAATGCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCAGAGGATTCC 22723231 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||| || || || || || || | || |||||||| Sbjct 22723232 ACCTCTAGTGTTATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 22723281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| || |||||||| | || || |||||||| || |||||||||||| Sbjct 22723583 TCTTCAAGTTGTTTTCCGGCAAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCTTTA 22723642 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| || |||||| || ||||| || ||| || || || || ||| Sbjct 22723643 TCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCACCTCAAGGGTGATG 22723702 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || ||||| | ||| || ||||| Sbjct 22723703 GTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCAT 22723737 >seq6 Length=112752717 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || ||||| || ||||| || || | || |||||| ||||| || |||||||||| Sbjct 25200051 CGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCTTCTT 25200110 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 ||||||| || || || || || ||| || || || ||||| || || ||||| | Sbjct 25200111 TATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACCTCGAGAGTTA 25200170 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || |||| ||||| | || |||||||| Sbjct 25200171 TGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 25200207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905118949500600