Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 239 5e-57 seq5 104 3e-16 seq1 102 1e-15 seq4 100 3e-15 >seq6 Length=112752717 Score = 239 bits (264), Expect = 5e-57 Identities = 216/272 (79%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| ||||||||||||||||| ||||| | |||| || || || Sbjct 97172513 GAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCGACCTGA 97172572 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| || ||||| |||||||||||| |||||||| Sbjct 97172573 ACCTCCTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCGGATGCGGCGAAG 97172632 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| ||||||||||||||||| ||||| |||| || |||||||| | Sbjct 97172633 AAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGATTCCCAGTGGCGG 97172692 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| || ||||| || ||||| || ||||||| ||| ||||| || || |||||| Sbjct 97172693 ATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGCTTTCTTGTAC 97172752 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 || ||||||| | |||| |||| ||||| Sbjct 97172753 ATTTCCCATATCTCAGGGTATTGGATTGGGAA 97172784 Score = 100 bits (110), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || ||| || || ||||||||||| |||| ||||| || Sbjct 97171919 GCCTTCTGGTACTCCCCAACACGCTTTTCAAAGAAGTTGGTCTTCCCCTGAAGCGAAATA 97171978 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| || ||||| | ||||| ||| | ||| || |||| | | Sbjct 97171979 AGCTCCATCCAATCAAAAGGGTTCTGAACATTGTACACCTTCTTGCACCCAAGCGCCACC 97172038 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| || || || || ||||| || ||||| | ||| ||| | ||||||| || | Sbjct 97172039 AGCAACCGATCTGCAACGAACTCAATATACTGACTCATCAGGTCTCCGTTCATTCCTACC 97172098 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 | ||| || |||| |||| ||||||||| |||| || || ||||| || Sbjct 97172099 AACGCGCAAGGAAGCGCGTCGCACACAAACTCCCTCTCTATATCCACGGCGTC 97172151 >seq5 Length=110037037 Score = 104 bits (114), Expect = 3e-16 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAG--C 1592210 ||||| ||| |||| ||||| || | || || || || |||||| | |||||||| | Sbjct 7277340 GTCGATCAGGCCACGCTCTTCGATCTCATTCTGGCTGCAAACTACTTGAACATCAAGAGC 7277399 Query 1592211 CTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGG 1592270 |||| | || ||| ||| || | ||||| ||||||||||||||||| | || |||| Sbjct 7277400 CTCT--TGGACCTTACTTGCCAGACAGTGGCAGACATGATCAAGGGCAAGACTCCGGAGG 7277457 Query 1592271 AGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||| |||||||| || || |||||| ||| Sbjct 7277458 AGATTCGCAAGACGTTCAATATCAAGAACG 7277487 >seq1 Length=107035537 Score = 102 bits (112), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCT 1592212 || || ||| |||||||||| || | ||||| || || |||||| | |||||||| Sbjct 11658888 GTTGACCAGGCCACCCTCTTCGATCTCATCCTGGCTGCGAACTACTTGAACATCAAGAGC 11658829 Query 1592213 CTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAG 1592272 ||||| ||||| ||| | ||||||| ||||||||||||| ||| | || ||||| Sbjct 11658828 CTGCTGGATCTCACATGCCAAACTGTGGCAGACATGATCAAGGGGAAGACTCCTGAGGAA 11658769 Query 1592273 ATCCGCAAGACCTTTAACATCAAG 1592296 || || ||||| || ||||||||| Sbjct 11658768 ATTCGTAAGACATTCAACATCAAG 11658745 >seq4 Length=123556382 Score = 100 bits (110), Expect = 3e-15 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 1592153 GTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAG--C 1592210 ||||| ||| |||| ||||| || | || || || || |||||| | |||||||| | Sbjct 116944424 GTCGATCAGGCCACGCTCTTCGATCTCATTCTGGCTGCAAACTACTTGAACATCAAGAGC 116944365 Query 1592211 CTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGG 1592270 |||| | || ||| ||| || | ||||| ||||||||||||||||| | || |||| Sbjct 116944364 CTCT--TGGACCTTACTTGCCAGACAGTGGCAGACATGATCAAGGGCAAGACTCCGGAGG 116944307 Query 1592271 AGATCCGCAAGACCTTTAACATCAAG 1592296 |||| |||||||| || || |||||| Sbjct 116944306 AGATTCGCAAGACATTCAATATCAAG 116944281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107015528522719