Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq4 82.4 6e-11 >seq3 Length=135057546 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || |||| || || || || ||| | || || || Sbjct 22723053 ATGCAAATCTTTGTCAAGACACTAACCGGAAAGACAATAACCCTGGAGGTCGAATCTTCG 22722994 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || ||| ||| || || ||||| || | || |||||| Sbjct 22722993 GACACAATTGACAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 22722934 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| ||||| ||| ||||||| | | || | || || |||||| Sbjct 22722933 CAGAGACTTATCTTTGCTGGTAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAAC 22722874 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||| |||||||| || ||||| | || ||| || | ||||| |||| Sbjct 22722873 ATTCAGAAGGAGTCCACCTTGCATCTTGTTTTGCGACTCCGAGGTGGAA 22722825 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| ||||| ||||| || ||||| || | || ||| | Sbjct 22723281 ATGCAGATTTTTGTCAAGACTTTGACAGGGAAGACCATAACACTAGAGGTGGAATCCTCT 22723222 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| |||||| || || || ||| | || |||||| Sbjct 22723221 GATACCATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAGGGCATTCCACCAGATCAG 22723162 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| ||||| ||||| || || | | || | || || ||||| Sbjct 22723161 CAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAAGATGGAAGGACGCTTGCAGATTACAAT 22723102 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| |||||||| || || || |||||||| Sbjct 22723101 ATTCAGAAGGAGTCCACTTTACATTTGGTGTTG 22723069 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| || || ||||| ||||| ||| | || ||| | | Sbjct 22723737 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAGACCATCACCCTTGAGGTGGAAAGTTCC 22723678 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||| ||||||||||| | || || ||| Sbjct 22723677 GATACAATTGATAATGTCAAGGCCAAAATTCAGGATAAAGAAGGAATCCCTCCTGACCAG 22723618 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||||| ||| || ||||| || || || | | ||| | || || |||||| Sbjct 22723617 CAAAGGCTTATTTTTGCCGGAAAACAACTTGAAGATGGTAGAACCCTTGCCGATTACAAC 22723558 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| || || | ||| ||||| Sbjct 22723557 ATTCAGAAGGAATCCACACTCCACTTGGTG 22723528 >seq4 Length=123556382 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || ||||| ||| | || |||| || Sbjct 120131428 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTGGAGGTGGAGTCT 120131369 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || |||||| || || |||||| | || ||| Sbjct 120131368 TCCGACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAAGGCATCCCTCCGGAC 120131309 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||||||||||| | || | || |||||| Sbjct 120131308 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTAC 120131249 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || ||||| || || Sbjct 120131248 AACATCCAGAAGGAATCCAC 120131229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398869474004323