Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3 143 2e-29 seq6 123 2e-23 seq5 109 4e-19 seq9 107 1e-18 seq2 84.2 2e-11 >seq3 Length=135057546 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||||||| |||||||| |||||||| || || || |||||||| ||||| || Sbjct 22723283 CCACCTCTCAAACGGAGCACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTGCT 22723342 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || || || || |||||| | ||||| || ||||| || || || Sbjct 22723343 AGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 22723402 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||||||||||||||| | ||| ||||||| | || | ||||| || ||| || Sbjct 22723403 ATACCCTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATGGTGTCCGAGGATTCCACC 22723462 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| ||||| ||||| || || || || ||||| Sbjct 22723463 TCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTTACGAAAATTTGCAT 22723509 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || | ||| | ||||| || || |||||||| ||||| |||| ||| | | Sbjct 22722839 CGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCA 22722898 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | || || |||||| | || | ||| |||||||| || || |||||||||||| Sbjct 22722899 TCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGATCAGGTGGGATACCCTCTTTG 22722958 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | |||| ||||||| | || | ||||| ||| ||| || || || ||||| Sbjct 22722959 TCTTGGATTTTTGCTTTGACATTGTCAATTGTGTCCGAAGATTCGACCTCCAGGGTTATT 22723018 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||| || || ||||| || ||||| Sbjct 22723019 GTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 22723053 Score = 120 bits (132), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| |||||||| | || ||||| ||||| ||||| ||||| |||| || || ||| Sbjct 22722613 CAGAACCAAATGCAAAGTAGATTCCTTTTGTATGTTGTAATCAGCAAGAGTACGGCCATC 22722672 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || || ||| | || | || ||||||||||| || |||||||||||||| Sbjct 22722673 TTCAAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGAGGGATACCCTCTTTGTC 22722732 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 || ||| || | || ||| | || | || |||||| ||| || || | ||| || | Sbjct 22722733 CTG-AATCTTCGCCTTCACATTATCAATTGTATCAGAACTTTCAACCTCCAAAGTGATTG 22722791 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || ||||| || ||||| || |||||| Sbjct 22722792 TCTTTCCGGTCAAGGTCTTGACAAAGATTTGCATT 22722826 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| || || ||||| ||||| || ||||| || || | || ||| | Sbjct 22722383 CGAAGGACAAGATGGAGGGTCGATTCCTTTTGGATATTATAGTCTGCTAATGTACGACCA 22722442 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || | ||||||||||||| | || | || |||||||| || ||||||||||| ||| Sbjct 22722443 TCCTCCAATTGTTTGCCAGCAAAGATGAGCCTCTGCTGATCGGGGGGAATACCCTCCTTG 22722502 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | || ||| | || | || ||||| ||| || || | ||| || Sbjct 22722503 TCCTG-AATCTTCGCCTTCACATTATCAATGGTATCAGAGCTTTCGACCTCCAAAGTAAT 22722561 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||| || ||||| || ||||| Sbjct 22722562 GGTCTTCCCCGTCAGGGTCTTCACAAAAATTTGCAT 22722597 >seq6 Length=112752717 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || |||||||| || ||||||||||| ||||| || | ||||||| Sbjct 25200220 ACGGAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCGGCGAGGGTGCGACC 25200279 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| || || | || | || |||||||| || ||||| || ||||| Sbjct 25200280 ATCCTCTAGCTGTTTCCCGGCGAAGATGAGTCGCTGCTGATCGGGAGGAATGCCTTCTTT 25200339 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || || | || | ||||| || ||| || || ||||| | Sbjct 25200340 GTCTTG-AATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAACCTCCAGAGTGA 25200398 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || |||| |||||| || || |||||||| Sbjct 25200399 TCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 25200435 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | ||| || ||||| || ||||||||||| ||||| || | ||||| || Sbjct 25199770 AGAACAAGATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGAGTGCGTCCGTCC 25199829 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || |||||| | || | | ||||| ||||| ||||| ||||| |||| Sbjct 25199830 TCAAGCTGCTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGTGGAATCCCCTC--TGTCC 25199887 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 |||| ||| || ||| | || | ||| |||||| || || || || ||||| || Sbjct 25199888 TGTATCTTTGCCTTCACATTATCAATAGTATCAGAACTCTCCACCTCTAGCGTTATCGTC 25199947 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||| || || || || |||||||| Sbjct 25199948 TTCCCGGTTAGAGTCTTCACGAAAATCTGCAT 25199979 >seq5 Length=110037037 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | ||| |||||||||||||| || ||||| ||||| || | ||||| Sbjct 23423257 CGTAGGACGAGATGGAGCGTGGATTCTTTCTGGATGTTGTAATCGGCGAGTGTGCGGCCG 23423198 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | || | | ||||| |||||||| || || |||||| Sbjct 23423197 TCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCTTCTTTG 23423138 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || || || | || | ||||| ||| ||| || ||||| || || Sbjct 23423137 TCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATG 23423078 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || |||| |||||| || || ||||||||||| Sbjct 23423077 GTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 23423040 Score = 105 bits (116), Expect = 5e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | || || |||||||| || || ||||| || || || | |||||| Sbjct 20101368 ACGGAGAACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 20101427 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || |||||||| || || || | |||| | |||||||||||| || || || || || Sbjct 20101428 GTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGATCCGGTGGGATCCCTTCCTT 20101487 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||||| ||||| | || | ||||| ||| || || || ||||| | Sbjct 20101488 ATCTTG-AATTTTTGCCTTGACGTTATCGATGGTGTCGGAACTCTCGACCTCGAGAGTGA 20101546 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | ||| || || || || ||||| Sbjct 20101547 TGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 20101583 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || || || || || ||||| || || || | |||||| Sbjct 20101140 ACGAAGTACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGGCC 20101199 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || || || || | ||||| || ||||| ||||| ||||||||||| || Sbjct 20101200 GTCCTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGAATACCCTCCTT 20101259 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | ||| ||||| | || | ||||| || ||| || || || || || Sbjct 20101260 ATCCTGGATTTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGAT 20101319 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| ||||| || |||||||| Sbjct 20101320 GGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 20101355 >seq9 Length=120672674 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || ||||| || || || || |||||||| || | |||||| ||| ||| Sbjct 111905506 ACCAAGTGGAGTGTGGACTCCTTCTGGATATTATAATCGGCGAGTGTGCGACCATCCTCG 111905565 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || ||||| ||| | || | || ||||||||||| || || || || |||||||| Sbjct 111905566 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGG 111905625 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || ||||| | || | || || || || || |||||||| || || || Sbjct 111905626 ATCTTGGCCTTGACGTTGTCGATTGTATCGGAGCTCTCGACCTCAAGAGTGATGGTCTTT 111905685 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||| ||||| || |||||||| Sbjct 111905686 CCGGTGAGGGTCTTAACGAAGATCTGCAT 111905714 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || ||||| || || || || |||||||| || | |||||| ||| ||| Sbjct 111941837 ACCAAGTGGAGTGTGGACTCCTTCTGGATATTATAATCGGCGAGTGTGCGACCATCCTCG 111941896 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || || ||||| ||| | || | || ||||||||||| || || || || |||||||| Sbjct 111941897 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGG 111941956 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || ||||| | || | || || || || || |||||||| || || || Sbjct 111941957 ATCTTGGCCTTGACGTTGTCGATTGTATCGGAGCTCTCGACCTCAAGAGTGATGGTCTTT 111942016 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | ||| ||||| || |||||||| Sbjct 111942017 CCGGTGAGGGTCTTAACGAAGATCTGCAT 111942045 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | ||||| ||||| || || ||||||||||| || |||| ||| | Sbjct 111904587 ACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTCCTTCC 111904646 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||| || ||||| ||||| || ||||| || || Sbjct 111904647 ATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTT 111904706 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | || ||| | || | ||||| || || || || | || | Sbjct 111904707 ATCCTG-AATCTTAGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGA 111904765 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || || ||||| |||||||| Sbjct 111904766 TGGTCTTACCGGTCAAAGTCTTCACAAAAATCTGCAT 111904802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||||||| | ||||| ||||| || || ||||||||||| || |||| ||| | Sbjct 111940918 ACGCAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTCCTTCC 111940977 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||| || ||||| ||||| || ||||| || || Sbjct 111940978 ATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTT 111941037 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | || ||| | || | ||||| || || || || | || | Sbjct 111941038 ATCCTG-AATCTTAGCCTTCACATTGTCAATCGTGTCGGAGCTCTCCACCTCCAAGGTGA 111941096 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || || ||||| |||||||| Sbjct 111941097 TGGTCTTACCGGTCAAAGTCTTCACAAAAATCTGCAT 111941133 >seq2 Length=93869048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || |||||||| | ||| ||||||| | || | |||||| ||||| Sbjct 92639952 AATACCTTCCTTGTCTTGGATTTTGGTTTTGACATTGTCGATGGTGTCACTGCTCTCTAC 92639893 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || ||||| |||||||||||||| || ||||||||||| || Sbjct 92639892 CTCGAGAGTGATGGTTTTCCCAGTTAAGGTTTTCACGAATATCTGCATCTT 92639842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385212124847487