Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq3 86.0 6e-12 >seq6 Length=112752717 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| |||||||||| ||||||| | || || ||| || Sbjct 25200436 CATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACGATCACTCTGGAGGTTGAATCCTC 25200377 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || ||||| | || || || ||| || ||||| || || || |||||||| Sbjct 25200376 CGACACAATCGACAACGTGAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCCGATCA 25200317 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||||| | || ||| ||||| || || |||| | | | || ||||||||| Sbjct 25200316 GCAGCGACTCATCTTCGCCGGGAAACAGCTAGAGGATGGTCGCACCCTCGCCGATTACAA 25200257 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||||| || ||||| Sbjct 25200256 CATTCAAAAGGAGTCCAC 25200239 >seq3 Length=135057546 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||| |||||||||| | || || | || |||||| | Sbjct 22723054 CATGCAAATCTTTGTCAAGACACTAACCGGAAAGACAATAACCCTGGAGGTCGAATCTTC 22722995 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || ||| |||||| || ||||||||||| || || ||||| Sbjct 22722994 GGACACAATTGACAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCACCTGATCA 22722935 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | | || || || | || |||| || | | |||||||| Sbjct 22722934 GCAGAGACTTATCTTTGCTGGTAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAA 22722875 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| || || |||||| | ||| | || || || | |||| |||| Sbjct 22722874 CATTCAGAAGGAGTCCACCTTGCATCTTGTTTTGCGACTCCGAGGTGGAA 22722825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086015534240