Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 152 7e-32 seq3 98.7 1e-15 seq1 84.2 3e-11 >seq6 Length=112752717 Score = 152 bits (168), Expect = 7e-32 Identities = 409/613 (67%), Gaps = 12/613 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| || || || ||||| ||||||| || || ||||| || || || Sbjct 97172210 AAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTT 97172269 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 | || ||||||| ||||||||||| ||||||||||| | |||| ||| | || || || Sbjct 97172270 AAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCG-AGCAGAAGCTCCCGGAGAA 97172328 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTAT 39791 |||||| ||||| || || || || || | | || || ||| | | | || Sbjct 97172329 GAAGATCCCTTCGACGCAGGCGAACGCGACGATGCGTTCCGCG-AACGATTCTGAGCCAT 97172387 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | ||||| ||||||||||||||||||||||| | || || || || | Sbjct 97172388 CGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAATTGCGT 97172447 Query 39852 TAAAGAGATAATGTTTTTCATCACTA-TCTTTAACATATGTATCTATTAACAGACTATAC 39910 |||||| || || || | | | ||||| | || || || | | || || ||| Sbjct 97172448 GGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGCTGTAC 97172506 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 || ||||| |||||||| || || || ||||| || ||||| || | ||| || | Sbjct 97172507 ATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCG 97172566 Query 39971 ATTTGTACCTCTGAACAAAATCTTTCCGCCAA-ATTTTCATTCACTATTCCATCACTAGC 40029 | || ||||| || | | ||||| ||| ||| || || || || || || Sbjct 97172567 ACCTGAACCTC-CTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCGGATGC 97172625 Query 40030 GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAATTTATTC 40087 ||| || || || | || || | ||||| | || || |||| | | | | Sbjct 97172626 GGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGAT--TCC 97172683 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| ||| || || | || ||||| || |||||||| ||||| ||||| || Sbjct 97172684 CAGTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGCT 97172743 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207 || |||||||| | |||||| ||| | ||||| ||||| || || ||||| | || Sbjct 97172744 TTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGTCAGGG 97172803 Query 40208 TTTTTTGCAAGGA 40220 ||| ||||||| Sbjct 97172804 TTTGGAGCAAGGA 97172816 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||||||||| ||| | |||||||||||| || || || || | |||| ||||| Sbjct 53473163 AATACCATTGGATGTCCCATTTGTTCCATGGATGTAGCTGCCAGTGGCGCAGATATTGTG 53473222 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || ||| | ||| ||||| ||||| ||| || | |||||| ||||| || | Sbjct 53473223 AACAGAAAAACCGATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTACC 53473282 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||| | |||||| ||||||||| |||| | | ||| || || ||| Sbjct 53473283 ATATATTCTCTCTATACTATCATCTTTCATATATATAAGGAAGCAACTA 53473331 >seq3 Length=135057546 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | ||| || || || |||||||||||| ||| ||| | || | Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| ||| | ||| |||||||| || || |||||||| | || || | |||||| Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTGTGAATTCCAACAGCAACCCTCATCAA 112999054 Query 70110 CATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 ||| ||||| || | ||| || | ||| | | | ||||| ||||| || | ||| Sbjct 112999053 CATGTGCTGGGGCCTTTCCACAACCTTTCCT--TGAACCTTCAAGAGGTAGGACCTCTCC 112998996 Query 70168 AGAGTTTTAAACCCAAAATA 70187 || |||||||| ||||| || Sbjct 112998995 AGGGTTTTAAAACCAAAGTA 112998976 >seq1 Length=107035537 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 ||||||||| ||| | |||||||||||| || || || || | || | ||||| Sbjct 18022540 AATACCATTTGATGTCCCATTTGTTCCACGTATGTAGCTGCCAGTGGCACAGATATTGTG 18022481 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || ||| | ||| ||||| ||||| ||| || | |||||| ||||| || | Sbjct 18022480 AACAGAAACACCAATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTACC 18022421 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||| |||||||| ||||||||| |||| | | ||| || || ||| Sbjct 18022420 ATATATTCCCTCTATACTATCATCTTTCATATATATAAGGAAGCAACTA 18022372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895860355480