Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq3 102 7e-17 seq9 89.7 4e-13 seq4 89.7 4e-13 >seq6 Length=112752717 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| ||||||| | || | ||| ||||| || || || || || ||||| || Sbjct 25199981 CCTCCACGCAACCTAAGAACAAGATGCAACGTCGACTCCTTCTGTATGTTGTAATCAGCA 25200040 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | |||| || | || || || ||| | ||||| ||||||||||| || || Sbjct 25200041 AGCGTCCTCCCGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGG 25200100 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| |||||| |||| | | |||| ||||| | | |||||| Sbjct 25200101 ATTCCTTCTTTATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACC 25200160 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | || ||||| || |||||||||||||| ||||| Sbjct 25200161 TCGAGAGTTATGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 25200207 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || ||||| |||||| | | |||| ||||||||||||| || || Sbjct 25200466 CGTGGACTCCTTCTGGATATTATAGTCGGCAAGGGTGCGACCGTCTTCGAGCTGCTTTCC 25200525 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || |||||||| | || || || || |||||| || Sbjct 25200526 GGCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTAGCCTT 25200585 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | || || | || || || || | || || | || || || || || Sbjct 25200586 CACATTGTCGATGGTATCGGAGGACTCCACCTCCAAGGTAATCGTCTTCCCTGTTAGGGT 25200645 Query 27230 TTTCACAAAGATTTGCATA 27248 |||||| ||||| |||||| Sbjct 25200646 TTTCACGAAGATCTGCATA 25200664 >seq3 Length=135057546 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||||| ||||||||||| || || || || ||||||||||| || Sbjct 22723053 TGCCACCACGGAGCCGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTG 22723112 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | ||||| ||||| |||||||| | ||||| | ||| ||||| || | Sbjct 22723113 CAAGCGTCCTTCCATCTTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTG 22723172 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||| ||||| | || | || || | || ||| | Sbjct 22723173 GAATGCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCAATGGTATCAGAGGATTCCA 22723232 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| | || || |||| ||| || ||||| || ||||| Sbjct 22723233 CCTCTAGTGTTATGGTCTTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 22723281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 124352727 GTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCG 124352668 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || ||||||| || Sbjct 124352667 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 124352608 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| || ||| Sbjct 124352607 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTT 124352548 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 124352547 TTCACGAAGATCTGCAT 124352531 >seq9 Length=120672674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || ||| ||| |||| |||||||| || || Sbjct 111905746 GTTGATTCCTTCTGGATGTTGTAGTCAGCGAGTGT-GCGGCCGTCCTCGAGCTGCTTGCC 111905804 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | || || || || ||||| || Sbjct 111905805 GGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCTTGAATCTTTGCCTT 111905864 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||||| | || ||||| ||||| |||| || || || || || Sbjct 111905865 AACGTTGTCGATGGTGTCTGAGCTCTCGACTTCGAGAGTGATAGTCTTCCCGGTGAGGGT 111905924 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 111905925 CTTAACGAAGATTTGCAT 111905942 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || ||| ||| |||| |||||||| || || Sbjct 111942077 GTTGATTCCTTCTGGATGTTGTAGTCAGCGAGTGT-GCGGCCGTCCTCGAGCTGCTTGCC 111942135 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | || || || || ||||| || Sbjct 111942136 GGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCTTGAATCTTTGCCTT 111942195 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||||| | || ||||| ||||| |||| || || || || || Sbjct 111942196 AACGTTGTCGATGGTGTCTGAGCTCTCGACTTCGAGAGTGATAGTCTTCCCGGTGAGGGT 111942255 Query 27230 TTTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 111942256 CTTAACGAAGATTTGCAT 111942273 >seq4 Length=123556382 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| || ||||| || ||| Sbjct 120131229 GTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 120131288 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || |||||| ||| Sbjct 120131289 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATCTTGGCCTTC 120131348 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | || ||||| || ||| Sbjct 120131349 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCCGTTAGGGTT 120131408 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 120131409 TTCACGAAGATCTGCAT 120131425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424926595415784