Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq3 104 3e-17 seq4 100 4e-16 seq10 82.4 1e-10 seq7 82.4 1e-10 >seq6 Length=112752717 Score = 107 bits (118), Expect = 2e-18 Identities = 247/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 |||||||||||||| || || | || ||||| || || || |||||||| || | || Sbjct 18233762 AAGCCATCCATCTCCGTCAGGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 18233705 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | | | ||||| | | ||| | ||||| |||||||||||||||||||| ||||| | Sbjct 18233704 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 18233645 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 |||| ||| ||| | ||||| | ||| | || | ||||| || |||| Sbjct 18233644 ATGGCGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCAA 18233585 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| |||||| || | | || | ||| || ||| || || | ||||| | Sbjct 18233584 CAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCGG 18233525 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | || || || || |||||||| || || || || ||| | ||||| ||| Sbjct 18233524 CAACCGCCCGTGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCTT 18233465 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 |||||||| ||||| | || | || || | |||||||||||| |||| | Sbjct 18233464 TTGGGATCTTAGCACCCAAAGCGGTGTACTTGTCAGGGTTCTTGAGAAAATCAACAACTT 18233405 Query 11898 CTTCAAGTTC 11907 | | ||||| Sbjct 18233404 CCTGCAGTTC 18233395 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || |||||||| || || | || || |||||| || ||||||||| | || Sbjct 97172227 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACCTGGCATTAACCC 97172286 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| |||| |||| | || | |||||| ||||||||||||||| || || || || Sbjct 97172287 ACGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGATCCCTTCGACGCA 97172346 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || ||||| | | |||||| ||||| || Sbjct 97172347 GGCGAACGCGACGATGCGTTCCGCGAACGA 97172376 >seq3 Length=135057546 Score = 104 bits (114), Expect = 3e-17 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| || ||||| | || ||| ||||| | ||| Sbjct 112999184 TGAGGCCTTGGAGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGA 112999125 Query 112001 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| ||| ||| | ||| || |||| || ||||| ||| ||| || || | || Sbjct 112999124 GACATCATGTGGTAAGTTCTGACAG-CAGATTCTATGTCATCCTTGTGAATTCCAACAGC 112999066 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||||| ||| || |||||| | | || | || || || |||| Sbjct 112999065 AACCCTCATCAACATGTGCTGGGGCCTTTCCACAACCTTTCC-TTGAACC-TTCAAGAGG 112999008 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 ||| | |||| |||||||| | |||||||||| || | || |||||| Sbjct 112999007 TAGGACCTCTCCAGGGTTTTAAAACCAAAGTAATCATAGTCGAAGTCCC 112998959 Score = 95.1 bits (104), Expect = 2e-14 Identities = 225/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || ||||| || | ||||| || | | || || Sbjct 130918720 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCGAAC 130918779 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||||| | ||| |||||||| |||||||| || | Sbjct 130918780 CCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCTCC---A 130918836 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | ||| | || || |||||||| ||||||| ||| ||||| || Sbjct 130918837 CCAATTCCAGTCCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCAA 130918896 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || || | | || | ||| || || ||| ||||| | ||||||| Sbjct 130918897 GGGGCATTCTCTTTAGCCTTCTTGAATAAATCACGGACTCTTGAAGCACCGATACCAACA 130918956 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | | ||| | || || ||| || ||| | ||| || || Sbjct 130918957 AACATCTCAACAAACTCAGAACCTGAG-ATTGAGAAGAACGGAACACCAGCTTCGCCAGC 130919015 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || ||| | |||||||| || || || || Sbjct 130919016 GATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 130919051 >seq4 Length=123556382 Score = 100 bits (110), Expect = 4e-16 Identities = 298/458 (65%), Gaps = 4/458 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || ||||| || | || || || | | || || Sbjct 22707503 TCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAAC 22707444 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||| || | || |||||||| |||||||| || | | Sbjct 22707443 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCTC 22707386 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| || | |||| | || || ||||| || ||||||| || ||||| || | Sbjct 22707385 CAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAAG 22707326 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | || | ||| ||||| | ||||| |||||||||| Sbjct 22707325 GAGCATTCTCTTTGGCCTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAACAA 22707266 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| ||||| | | | ||| || |||||||||| || ||| || || | Sbjct 22707265 ACATCTCAACAAACTCGGAACCTGAGATGGAGAAGAATGGGACACCTGCTTCCCCTGCAA 22707206 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| | || ||||| || || ||||| ||| | ||||| | ||| | Sbjct 22707205 TAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGGAGGACCAACAAGAAGAACTCCTTTCG 22707146 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTT 11900 | || || ||| || | ||||| || | ||| ||||| ||||| | ||| Sbjct 22707145 GAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACTACCTCCA 22707086 Query 11901 CAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||| || | || | ||| |||||||| Sbjct 22707085 TAAAGTCCTGTTTAGCTTCATCCACCCCAGCAACATCA 22707048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 267/406 (66%), Gaps = 16/406 (4%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || ||||| ||||| || | || ||||| | | || || ||||| || |||||| Sbjct 117762238 TTGGTGGCAGCAATGACAATAACACCAGTGTTTCCGGTGAATCCGTCCATTTCAGTGAGT 117762297 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGT 11617 |||||||| | |||||| ||||| |||||||| || |||| |||| || | Sbjct 117762298 AATTGATTCAGTGTTTGCTCTCTTTCATCATTCCCT---CCACCAATGCCAGTACCTCTC 117762354 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || ||||| | |||||||||||| || | ||| || ||| | || Sbjct 117762355 TGCCTCCCTACAGCATCTAACTCATCAATGAACACCAAACACGGCGAATTCGCTTTTGCC 117762414 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | | || | || | |||||| ||||| ||||||||||||||||| | || | | Sbjct 117762415 TTGTTGAACAAGTCCCTCACCCTTGAAGCACCTACACCAACAAACATCTCAATGAACTCT 117762474 Query 11738 G----CGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | | |||| | | |||||||||| | ||| || || || ||| || || Sbjct 117762475 GAACCTGATAGAGAA----AAGAATGGGACACCAGCTTCTCCTGCAATTGCTTTAGCCAG 117762530 Query 11794 GAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGC-AC 11852 | ||||| || || ||||| || | | |||| | ||| || ||||| || | Sbjct 117762531 CAATGTCTTCCCTGTCCCTGGTGGCCCTACCAAAAGGACCCCTTTCGGAATCTTCGCTCC 117762590 Query 11853 CACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| || | | | |||| ||| ||| | || ||||||||||| Sbjct 117762591 CACGGCCGAGA-ACTTCTCTGGTGTCTTCAAGAACTCCACAATCTC 117762635 >seq10 Length=109463236 Score = 82.4 bits (90), Expect = 1e-10 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || ||| | ||||| || | || ||||| | | | ||| || ||||| || |||||| Sbjct 4696854 TTGGTGACAGCAATGACAATAACACCAGTGTTTTCGGTAAATCCGTCCATTTCAGTGAGT 4696795 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGT 11617 |||||||| | ||||| ||||| |||||||| || |||| |||| || | Sbjct 4696794 AATTGATTCAGTGTTTTCTCTCTTTCATCATTCTCT---CCACCAATGCCAGTACCTCTC 4696738 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || ||||| | ||||||||||| || | ||| || ||| | || Sbjct 4696737 TGCCTCCCTACAGCATCTAATTCATCAATGAACACCAAACACGGCGAATTCGCTTTTGCC 4696678 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727 | | || | || | |||||| ||||| ||||||||||||||||| Sbjct 4696677 TTGTTGAACAAGTCCCTCACCCTTGAAGCACCTACACCAACAAACATCTC 4696628 >seq7 Length=79126724 Score = 82.4 bits (90), Expect = 1e-10 Identities = 130/185 (70%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 11546 TCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA 11605 ||||| || |||||||||||||| | |||||| ||||| ||||||||| || |||| Sbjct 25050850 TCCATTTCAGTGAGTAATTGATTCAGTGTTTGCTCTCTTTCATCATTTCCT---CCACCA 25050906 Query 11606 ---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| || | ||| | || || ||||| | ||||||||| || || | ||| || Sbjct 25050907 ATGCCAGTACCTCTCTGCCTCCCTACAGCATCTAACTCATCAATAAACACCAAACACGGC 25050966 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| | || | | || | || | |||||| ||||| |||||||||||| Sbjct 25050967 GAATTCGCTTTTGCCTTGTTGAACAAGTCCCTCACCCTTGAAGCACCTACACCAACAAAC 25051026 Query 11723 ATCTC 11727 ||||| Sbjct 25051027 ATCTC 25051031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020169447200