Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 113 6e-20 seq3 95.1 1e-14 seq4 91.5 2e-13 >seq6 Length=112752717 Score = 113 bits (124), Expect = 6e-20 Identities = 376/573 (66%), Gaps = 29/573 (5%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786 || |||||||| ||||| || |||||||| |||||||| | |||| | || |||||| Sbjct 97171928 TACTCCCCAACACGCTTTTCAAAGAAGTTGGTCTTCCCCTG-AAGCGAAATAAGCTCCAT 97171986 Query 129787 AAAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGG 129841 ||||||| ||||||| ||| | || || || |||| |||| | || Sbjct 97171987 CCAATCAAAAGGGTTCTGAACATTG---TACACCTT-CTTGCAC-CCAAGCGCCACCAGC 97172041 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 | ||||| | ||| ||||||| |||| | |||| || |||||| || | | Sbjct 97172042 AACCGATCTGCAACGAACTCAATATACTGACTCATCAGGTCTCCGTTCATTCCTACCAAC 97172101 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || || |||||||| | | ||| || |||| || ||||| || ||| |||||| Sbjct 97172102 GCGCAAGGAAGCGCGTCGCACACAAACTCCCTCTCTATATCCACGGCGTCCTTCACGATC 97172161 Query 129962 GCGTGAATGGTCTCCGT-GCCAGGTCTATTGCGCA-AAGTCTTGAAGAGTTC--CACG-- 130015 | | | |||| | || | | || | || ||| ||||| | || | Sbjct 97172162 CCCTTCACACGCTCCTCAGGGAGCT-TCTTCCTCAGAAG------AGAGTACAGCAAGCA 97172214 Query 130016 -GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 || || || |||||| || || || || ||||| | || ||||||||| | ||| Sbjct 97172215 CGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACC 97172274 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||| | || ||||| |||| ||| || |||| || || || ||||||||||| Sbjct 97172275 TGGCATTAACCCACGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGAT 97172334 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||| || || || |||||||| | || || || || || || || ||| | Sbjct 97172335 CCCTTCGACGCAGGCGAACGCGACGATGCGTTCCGCGAACGATTCTGA---GCCATCGAT 97172391 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 ||| | ||||||| || || |||| | ||| || ||||||| || || | || Sbjct 97172392 CCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAATTGCGTGGAA 97172451 Query 130255 GAGTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 ||| ||||| ||||||| ||||||||||| Sbjct 97172452 GAGACGATTCTTCTCTGATGAGTCTTTGATGTA 97172484 Score = 91.5 bits (100), Expect = 2e-13 Identities = 213/317 (67%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 |||||||||||||| |||| ||| || || ||||| || || | ||||| ||| | || Sbjct 18233762 AAGCCATCCATCTCCGTCAGGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 18233705 Query 14213 ATAC--CACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | ||| || | | ||| | || ||||| ||||| ||||| |||||||| || | Sbjct 18233704 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 18233645 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 |||| | ||| || ||| ||||| | ||| | ||| | ||||| || || Sbjct 18233644 ATGG-CGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCA 18233586 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||||| |||||| || | | || | || || ||| || || | ||||| Sbjct 18233585 ACAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCG 18233526 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCA 14449 || | || || || || ||||||||||| || || ||| ||| | ||||| || Sbjct 18233525 GCAACCGCCCGTGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCT 18233466 Query 14450 CGTGGGATCCTGGCACC 14466 ||||||| | ||||| Sbjct 18233465 TTTGGGATCTTAGCACC 18233449 >seq3 Length=135057546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/339 (67%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || ||| | ||| || || || || || | |||||| || | || || Sbjct 130918719 GTCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCGAA 130918778 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC---AGG 14211 |||||||| || ||||| || ||||||| || ||||| | |||||||||| | | Sbjct 130918779 CCCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCTCCACC 130918838 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 || ||| | | || ||| | || || || ||||||||||| | ||| || || || Sbjct 130918839 AATTCCAGTCCCTCT---TTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCA 130918895 Query 14272 TGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 || ||| || || |||| || | ||| || ||||| ||||||| ||| Sbjct 130918896 AGGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACGGACTCTTGAAGCACCGATACCA 130918953 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACC 14388 ||||||||||| ||||| | | | | | |||| || ||| || || || ||| || Sbjct 130918954 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCGCC 130919012 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 ||||| || ||| | ||||||||||| || || || Sbjct 130919013 AGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 130919051 >seq4 Length=123556382 Score = 91.5 bits (100), Expect = 2e-13 Identities = 227/338 (67%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || ||| | ||| || || || ||||||| ||| || || | || || Sbjct 22707504 GTCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAA 22707445 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | | Sbjct 22707444 CCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCT 22707387 Query 14215 ACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | | || | || | |||| | || || || || |||||||| | ||||| || || Sbjct 22707386 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAA 22707327 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || || | ||||| ||||| | Sbjct 22707326 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAA 22707269 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCC 14389 |||||||||| ||||| | || | | | || | || ||| ||||| | ||| || Sbjct 22707268 CAAACATCTCAACAAACTCGGAACCTG-AGATGGAGAAGAATGGGACACCTGCTTCCCCT 22707210 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || ||| | || ||||| || || ||||| Sbjct 22707209 GCAATAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGG 22707172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423550226920