Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq6 113 5e-20 seq3 102 1e-16 >seq4 Length=123556382 Score = 136 bits (150), Expect = 5e-27 Identities = 285/420 (68%), Gaps = 20/420 (5%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || ||||||| ||||| || | | || || Sbjct 22707503 TCAAGAATGTCAGCTCTGTTAGTTGCTGCAATGACAATGATACCGGTATTACCCTCGAAC 22707444 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || ||||| | |||||||||| || | | Sbjct 22707443 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCT--CCTC 22707386 Query 9677 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 | | |||| || | |||| |||| || ||||| || ||||||| || || ||||| | Sbjct 22707385 CAATTCCAGTACCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAAAACAATGCAAG 22707326 Query 9735 GTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 | ||| || || |||| || | ||| || ||||| || || |||||||| Sbjct 22707325 GAGCATTCTCTTTGGC--CTTCTTGAATAAATCACGAACACGAGAAGCACCAACACCAAC 22707268 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACAT----TG--GATGAAGGGGACATTAGATTC 9846 ||||||||| ||||| | |||||| | || || ||| |||||| | ||| Sbjct 22707267 AAACATCTCAACAAACT------CGGAACCTGAGATGGAGAAGAATGGGACACCTGCTTC 22707214 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 || ||||| || ||| | || |||||||| || ||||| ||| | || || | Sbjct 22707213 CCCTGCAATAGCCTTGGCTAACAGCGTCTTACCGGTTCCTGGAGGACCAACAAGAAGAAC 22707154 Query 9907 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| ||||| || ||| || | | |||||||| | ||| ||||| ||||| Sbjct 22707153 TCCTTTCGGAATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCAC 22707094 >seq6 Length=112752717 Score = 113 bits (124), Expect = 5e-20 Identities = 248/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||| |||| || |||||||| || || |||| ||||| ||| | || Sbjct 18233762 AAGCCATCCATCTCCGTCAGGAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCC--GC 18233705 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | ||||| | | ||| | |||||||||||||||||||||||||| || |||| Sbjct 18233704 CTCCGAGACCAGCCCCTCTCTGCCTCCCCACGGCATCAATCTCATCAATGAAAACAATGC 18233645 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 |||| ||| || ||||| | ||||| || || || || || |||| Sbjct 18233644 ATGGCGCCTTTGACTTGGCTTTCTCAAACAAATCCCTCACGCGGGAAGCACCAACCCCAA 18233585 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9851 |||||| |||||| || | | || | || || ||| || || | ||||| | Sbjct 18233584 CAAACAGCTCCACGAACTCCGAAGCCGCGCAAGAGAAGAACGGTACTCCGGCCTCACCGG 18233525 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 ||| || || || ||||| ||||| || || || || ||| | || || ||| Sbjct 18233524 CAACCGCCCGTGCCAGAAGGGTCTTCCCGGTTCCAGGTGGCCCCACCAGAAGACACCCTT 18233465 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTT 9971 ||| ||||| || || | ||| | ||||| | ||| |||||||| |||| || Sbjct 18233464 TTGGGATCTTAGCACCCAAAGCGGTGTACTTGTCAGGGTTCTTGAGAAAATCAACAACTT 18233405 Query 9972 CTTCCAATTC 9981 | | || ||| Sbjct 18233404 CCTGCAGTTC 18233395 Score = 100 bits (110), Expect = 3e-16 Identities = 172/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||||| | ||||| | || || | || ||||| ||| | | |||||||| || Sbjct 97172466 GAGAAGAATCGTCTCTTCCACGCAATTGAGACCGTTCCTTGTGTAAAGAAGAAAGCTGAG 97172407 Query 94762 TGGGC--TATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 ||||| || || ||| | ||| | || ||||| || || || || |||| Sbjct 97172406 TGGGCCCTACGA--TGGATCGATGGCTCAGAATCGTTC----GCGGAACGCATCGTCGCG 97172353 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 || || || || || || ||||||||||| || ||||||| | || | |||||| || Sbjct 97172352 TTCGCCTGCGTCGAAGGGATCTTCTTCTCCGGGAGCTTCTGCTCGATATTTTGGCTGAAA 97172293 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 94938 ||||| || | ||||||||| | |||||| |||||| | ||||| || || || || Sbjct 97172292 AAGCGTGGGTTAATGCCAGGTTTAACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGC 97172233 Query 94939 CTCCAC 94944 |||||| Sbjct 97172232 CTCCAC 97172227 >seq3 Length=135057546 Score = 102 bits (112), Expect = 1e-16 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 104195 || |||| ||||| || ||| |||||| | |||||||| |||| | ||| |||| || Sbjct 112998958 AGGGACTTCGACTATGATTACTTTGGTTTTAAAACCCTGGAGAGGTCCTACCTCTTGAA- 112999016 Query 104196 GGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTA 104255 || || | | ||| |||||| || ||| ||||||| ||| | || || | || | Sbjct 112999017 GGTTCAAGGAAAGGTTG-TGGAAAGGCCCCAGCACATGTTGATGAGGGTTGCTGTTGGAA 112999075 Query 104256 TTCATGGGGAAGACATTGATTCTGTCTTGGAGA-CATACGACAAGATGTCCCAAGGTATG 104314 |||| ||| ||||| || |||| || ||| | ||| ||| |||||| ||| | | Sbjct 112999076 TTCACAAGGATGACATAGAATCTG-CTGTCAGAACTTACCACATGATGTCTCAAAGATGG 112999134 Query 104315 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 |||| ||| || | ||||| || ||||||||||| || ||||| || ||| Sbjct 112999135 TTCACTCATGCTTCCCCAACACTTTTCAATGCTGGAACTCCAAGGCCTCAA 112999185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 230/340 (68%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || || || | || ||||| | | || || Sbjct 130918720 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATTACGATGATGCCTGTATTACCCTCGAAC 130918779 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||| || || | || ||||| | |||||||||| || | Sbjct 130918780 CCATCCATTTCTGTCAAAAGCTGATTGAGTGTCTGTTCTCTTTCATCATTCCCT---CCA 130918836 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | ||| | || || |||||||| ||||||| ||| || ||||| Sbjct 130918837 CCAATTCCAGTCCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACGAACACAATGCAA 130918896 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || ||| || ||| |||| || | ||| || || |||| || || | ||| Sbjct 130918897 GGGGCATTCTCTTTAGC--CTTCTTGAATAAATCACG--GACTCTTGAAGCACCGATACC 130918952 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9848 |||||||||||| ||||| | | | | | |||| || ||| || ||| || ||| | Sbjct 130918953 AACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAGAACGGAACACCAGCTTCGC 130919011 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || || ||| | ||| ||||| || || || || Sbjct 130919012 CAGCGATCGCCTTGGCCAAAAGGGTCTTCCCAGTTCCAGG 130919051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249812824680