Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 172 6e-38 seq9 91.5 2e-13 seq3 91.5 2e-13 seq1 84.2 2e-11 >seq6 Length=112752717 Score = 172 bits (190), Expect = 6e-38 Identities = 570/870 (66%), Gaps = 26/870 (3%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||||||||| |||||||||||||| | | ||| || ||||||| Sbjct 97171928 TACTCCCCAACACGCTTTTCAAAGAAGTTGGTCTTCCCCTGAAGCGAAATAAGCTCCATC 97171987 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAGGCGA 74582 || || |||||||||| || ||| | ||| ||||| | ||| | ||| Sbjct 97171988 CAATCAAAAGGGTTCTGAACATTGTACACCTTCTTGCACCCAAGCGCCACCAGCAACCGA 97172047 Query 74583 TCCGCCACAAATTGAATGTACTGCGTCATT---TCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || | ||| ||||| |||| ||||| | ||| || | | | Sbjct 97172048 TCTGCAACGAACTCAATATACTGACTCATCAGGTCTCCG---TTCATTCCTACCAACGCG 97172104 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC--CATTGGACAATC- 74696 || || || || ||| | |||||| ||||| | || || | | | || || ||| Sbjct 97172105 CAAGGAAGCGCGTCGCACACAAACTCCCTCTCTATATC-CACGGCGTCCTTC-ACGATCC 97172162 Query 74697 --TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGT-CACGGCA 74753 || | || | |||| ||| | |||||| ||||||| ||| |||| | Sbjct 97172163 CCTTCACACGCTCCTC---AGGGAGCTTCTTCCTCAGAAGAGAGTACAGCAAGCACGCGA 97172219 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || | | | | ||||||||||| ||||| || ||||| || | | || ||| Sbjct 97172220 AATCGCAGTGGAG-GCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTTAAACCTGGC 97172278 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || | |||||||| |||| |||||| || | |||||| || ||||||||| ||| Sbjct 97172279 ATTAACCCACGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGGAGAAGAAGATCCCT 97172338 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTC 74933 ||||| || || || ||||| | ||||| |||||||| | | | | ||||| Sbjct 97172339 TCGACGCAGGCGAACGCGACGATGCGTTCCGCGAACGATTCTGAGCCATCGATCCATCGT 97172398 Query 74934 TGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTT 74993 | ||||| |||||||| || || ||| || || || || || |||||||| | Sbjct 97172399 AGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAATTGCGTGGAAGAGACGA 97172458 Query 74994 GCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGA 75053 ||||||| | || |||| | | || | | || |||| |||| || || Sbjct 97172459 TTCTTCTCTGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGCTGTACATCTCTGAGTGG 97172518 Query 75054 ATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 || |||| ||| ||| |||| | ||||||| | || ||||| || | ||| || | Sbjct 97172519 ATGTTCTCGATTG--CGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCGACCTGAACCT 97172576 Query 75112 CCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAA 75169 |||| || || ||| | | | |||||||| |||||||||||| || |||||||| || Sbjct 97172577 CCTTCATG-AACCTTC-CGGCAAGATTCTCCAGGACGATGCCGTCGGATGCGGCGAAGAA 97172634 Query 75170 AGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAG 75229 || || || |||||||||||||||| |||| ||||| ||||| | | Sbjct 97172635 GGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGATTCCCAGTGGCGGAT 97172694 Query 75230 GTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAA 75289 ||| || | | |||| ||||| | |||||||| | ||| || ||||||| Sbjct 97172695 GTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGCTTTCTTGTACAT 97172754 Query 75290 AGACCACAAGTCAGGGTAATTGATTGGAAA 75319 ||| | |||||||| | |||||| || Sbjct 97172755 TTCCCATATCTCAGGGTATTGGATTGGGAA 97172784 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 5399220 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5399279 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 5399280 TGAGCTACGAGAGCA 5399294 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 15920715 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15920656 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 15920655 TGAGCTACGAGAGCA 15920641 >seq9 Length=120672674 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 116162968 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 116162909 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 116162908 TGAGCTACGAAAGCA 116162894 >seq3 Length=135057546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 133733810 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 133733751 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 133733750 TGAGCTACGAAAGCA 133733736 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 117695443 GAATGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 117695502 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 117695503 AACTGAGCTATGAAAGC 117695519 >seq1 Length=107035537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||| ||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 96093408 ACTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 96093467 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||| ||| Sbjct 96093468 ACTGAGCTACGAGAGC 96093483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205691818600