Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq4 95.1 1e-14 seq6 91.5 1e-13 seq9 89.7 4e-13 seq5 87.8 2e-12 >seq3 Length=135057546 Score = 104 bits (114), Expect = 2e-17 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| |||||||| || | |||||| || || ||| || || | Sbjct 22723496 ACGAAAATTTG--CATGCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCT 22723553 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || ||||||||||| |||| | || ||||| ||||| || ||||| ||||| | Sbjct 22723554 GAATGTTGTAATCGGCAAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAAATAAGCC 22723613 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||||||| | || | | ||||| ||| ||||| |||| | | | | Sbjct 22723614 TTTGCTGGTCAGGAGGGATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTG 22723673 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 ||||| ||||| || | ||||| | || ||||||| ||||| || ||||||| Sbjct 22723674 TATCGGAACTTTCCACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTT 22723733 Query 39281 GCATCT 39286 |||||| Sbjct 22723734 GCATCT 22723739 Score = 98.7 bits (108), Expect = 9e-16 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 124352721 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTGCCGGCGAAG 124352662 Query 39154 ATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||||||||||| ||||||| | || || |||||| ||| || |||| ||| Sbjct 124352661 ATGAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 124352604 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| | Sbjct 124352603 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 124352544 Query 39272 CAAAGATTTGCATCTTTACG 39291 | ||||| ||||||||| || Sbjct 124352543 CGAAGATCTGCATCTTTGCG 124352524 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||||| ||| ||| || || ||||| ||||| ||||| || | | | Sbjct 22723067 CGCAACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGCAAGCGTCCTTCCA 22723126 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| || || ||||| || || | |||||| || | || | || ||| ||| Sbjct 22723127 TCTTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTG 22723186 Query 39190 TCC 39192 ||| Sbjct 22723187 TCC 22723189 >seq4 Length=123556382 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 120131235 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 120131294 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | || || |||||| ||| | | | | ||| Sbjct 120131295 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATCTTGGCCTTCACGTT 120131353 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| |||||||| |||| ||||| | || ||||| || ||||| || Sbjct 120131354 GTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCCGTTAGGGTTTTCAC 120131413 Query 39273 AAAGATTTGCATCTTTACG 39291 ||||| |||||||||||| Sbjct 120131414 GAAGATCTGCATCTTTACG 120131432 >seq6 Length=112752717 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || |||||||| |||||||| || || |||| || ||||| Sbjct 25200461 TGGAGCGTGGACTCCTTCTGGATATTATAGTCGGCAAGGGTGCGACCGTCTTCGAGCTGC 25200520 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || |||||||||||||| | || | || || ||||| ||| || Sbjct 25200521 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTA 25200580 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | |||||| |||||||| |||| || || | || || || Sbjct 25200581 GCCTTCACATTGTCGATGGTATCGGAGGACTCCACCTCCAAGGTAATCGTCTTCCCTGTT 25200640 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || ||||| ||||| Sbjct 25200641 AGGGTTTTCACGAAGATCTGCAT 25200663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 77/96 (80%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| ||||| || || |||||||| || || ||| |||| |||||||| Sbjct 25199778 ATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGAGTGCGTCCGTCCTCAAGCTG 25199837 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGG 39175 || || ||||| || ||||||||||||| |||||| Sbjct 25199838 CTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGTGG 25199873 >seq9 Length=120672674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || ||| ||| || || |||||||||||||| ||||| || | || Sbjct 111905503 AAGACCAAGTGGAGTGTGGACTCCTTCTGGATATTATAATCGGCGAGTGTGCGACCATCC 111905562 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || ||||| ||||| ||||| || || | |||||| || | || | || || ||||| Sbjct 111905563 TCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCT 111905622 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| ||| | | | |||||| ||| || || | ||||| | Sbjct 111905623 TGGATCTTGGCCTTGA-CGTTGTCGATTGTATCGGAGCTCTCGACCTCAAGAGTGATGGT 111905681 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || ||||| ||||| ||||| Sbjct 111905682 CTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 111905714 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || ||| ||| || || |||||||||||||| ||||| || | || Sbjct 111941834 AAGACCAAGTGGAGTGTGGACTCCTTCTGGATATTATAATCGGCGAGTGTGCGACCATCC 111941893 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 || ||||| ||||| ||||| || || | |||||| || | || | || || ||||| Sbjct 111941894 TCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCT 111941953 Query 39193 ATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| ||| | | | |||||| ||| || || | ||||| | Sbjct 111941954 TGGATCTTGGCCTTGA-CGTTGTCGATTGTATCGGAGCTCTCGACCTCAAGAGTGATGGT 111942012 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || ||||| ||||| ||||| Sbjct 111942013 CTTTCCGGTGAGGGTCTTAACGAAGATCTGCAT 111942045 >seq5 Length=110037037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||||| || | ||| |||||| ||||| || || || |||||||| ||||| || | Sbjct 23423258 GCGTAGGACGAGATGGAGCGTGGATTCTTTCTGGATGTTGTAATCGGCGAGTGTGCGGCC 23423199 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| |||||||| || || || || || || ||||||||||| | || | | ||||| Sbjct 23423198 GTCCTCAAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCTTCTTT 23423139 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||| || || | ||| | | | || ||| || ||||| || | |||| Sbjct 23423138 GTCTTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGA 23423080 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||| || ||||| || || || ||||| || Sbjct 23423079 TGGTCTTCCCCGTTAGGGTTTTCACGAAAATCTGCATTTT 23423040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429537710723891