Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 165 1e-35 seq3 100 4e-16 >seq6 Length=112752717 Score = 165 bits (182), Expect = 1e-35 Identities = 411/614 (67%), Gaps = 14/614 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || ||||| || || || |||||||||| || || ||||| || || || Sbjct 97172210 AAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTT 97172269 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AA 48256 | ||| ||||||| ||||| ||||| ||||||||||| | || ||| ||| | | || Sbjct 97172270 AAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCGA-GCAGAAGCTCCCGGAGAA 97172328 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG-- 48314 ||| || ||||| ||| || || ||| | | || || ||| | ||| | Sbjct 97172329 GAAGATCCCTTCGACGCAGGCGAACGCGACGATGCGTTCCGCG-AAC--GATTCTGAGCC 97172385 Query 48315 -TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | ||||| ||| | ||||| ||||| ||||||||||||||||| | || || || || Sbjct 97172386 ATCGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAATTGC 97172445 Query 48374 ATTAAAGAGAAAGtttttttCATTGCT--ATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 | |||||| || || || || | ||||| | |||||| || | | || || Sbjct 97172446 GTGGAAGAGACGATTCTTCTC--TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGCTG 97172503 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || ||||| || || || ||||| ||||| || ||||| || | || || Sbjct 97172504 TACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCG 97172563 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAA-ATTCTCATTTACTATTCCATCACT 48550 | || ||| |||||| | || | | ||| | ||| |||||| || || || || Sbjct 97172564 GCGACCTGAACCTCC-TTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCGGA 97172622 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 || || || || || | || || | ||||| | ||| | || || | Sbjct 97172623 TGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGATTC 97172682 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||| ||| || || | || ||||| || |||||||| || |||||||| || Sbjct 97172683 CCAGTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGC 97172742 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 ||| || ||||| | |||||| ||| ||||||||||||||| || ||||| | || Sbjct 97172743 TTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGTCAGG 97172802 Query 48731 ATTTTTTGCAAGGA 48744 ||| ||||||| Sbjct 97172803 GTTTGGAGCAAGGA 97172816 >seq3 Length=135057546 Score = 100 bits (110), Expect = 4e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||| || | ||| || || ||||| || |||||| ||| ||| | | | Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| ||| | ||| ||||||||||| | ||| |||||||| || || || | ||||| Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCA 112999055 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| ||||| || ||||| || ||| | | ||||| | ||| || | |||| Sbjct 112999054 ACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCA 112998995 Query 78577 AAGTTTTAAAACCAAAATA 78595 |||||||||||||| || Sbjct 112998994 GGGTTTTAAAACCAAAGTA 112998976 Score = 100 bits (110), Expect = 4e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||| | | | || | || |||||||| || |||||| ||| |||| || Sbjct 113000037 TCTCTTTCATACTTATTGTACAACCTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 112999978 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || ||||| || || | ||| ||||| || |||| || ||||| || ||||||| Sbjct 112999977 GGTGCCTCATTGGGACAAAACAAAGACCATTCTCCATTAGACTGAACTCTTTCCATAAAG 112999918 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| || ||| ||||||||||| | | ||| ||||| Sbjct 112999917 AGATCAGGCACCCAAAGTGCATAAAATAGATCTCTCGCGCGATGCTCTTC 112999868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655714176480