Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25] 1,507 sequences; 1,084,261,490 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq3 102 1e-16 seq1 87.8 3e-12 >seq6 Length=112752717 Score = 141 bits (156), Expect = 1e-28 Identities = 387/582 (66%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || || ||||| || || ||||||||||||| || || ||||| || || || Sbjct 97172210 AAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTT 97172269 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745 | || ||||||| ||||||||||| ||||||||||| | || ||| | || || || Sbjct 97172270 AAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCG-AGCAGAAGCTCCCGGAGAA 97172328 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA-TTAT 46804 ||| || ||||| || ||||| ||||| | | || || ||| | | || Sbjct 97172329 GAAGATCCCTTCGACGCAGGCGAACGCGACGATGCGTTCCGCG-AACGATTCTGAGCCAT 97172387 Query 46805 GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864 ||||| | | | ||||| ||||| || |||||||||||||| | || || || || | Sbjct 97172388 CGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAATTGCGT 97172447 Query 46865 TAAAGAGAAAGtttttttCATCACTA-TCTTTAACATATGTATCTATTAAAAGACTATAC 46923 |||||| || || || | | | ||||| | || || || | | || || ||| Sbjct 97172448 GGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGCTGTAC 97172506 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 || ||||| || ||||| || || || ||||| || ||||| || | ||| || | Sbjct 97172507 ATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCG 97172566 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGC 47042 | ||| ||||| | || | | ||| | ||| |||||| || || || || || Sbjct 97172567 ACCTGAACCTC-CTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCGGATGC 97172625 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 || || || || | || || | ||||| | || || || || | ||| Sbjct 97172626 GGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGATTCCCA 97172685 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 || ||| || || | || ||||| || ||||||||||| || ||||| ||||| Sbjct 97172686 GTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGCTTT 97172745 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || ||||| | |||||| ||| | |||||||| || || || Sbjct 97172746 CTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACAT 97172787 >seq3 Length=135057546 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||||||||||| | | || |||| |||||||| || |||||| ||| ||||||| Sbjct 113000037 TCTCTTTCATACTTATTGTACAACCTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 112999978 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || ||||| ||||| | ||| ||||| || |||| || ||| | || ||||||| Sbjct 112999977 GGTGCCTCATTGGGACAAAACAAAGACCATTCTCCATTAGACTGAACTCTTTCCATAAAG 112999918 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||||||| | ||| || ||| ||||||||||| Sbjct 112999917 AGATCAGGCACCCAAAGTGCATAAAATAGATCTC 112999884 Score = 100 bits (110), Expect = 4e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| ||||| || | ||| || || ||||||||||||||| ||| ||| | | | Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| ||| | | | | |||||| || | ||| |||||||| ||||| || | ||||| Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCA 112999055 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| ||||| || | ||| ||| ||| | | ||||| | ||| || | |||| Sbjct 112999054 ACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCA 112998995 Query 77172 AAGTTTTAAAACCAAAATA 77190 |||||||||||||| || Sbjct 112998994 GGGTTTTAAAACCAAAGTA 112998976 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | | ||| |||| ||| || Sbjct 112999538 CCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACCCGTAGCATAGGAAGAATACCA 112999479 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| |||||| || || || ||| |||||||| || || ||| Sbjct 112999478 TTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGAA 112999419 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| ||||| ||| ||| | |||||| ||||| || ||||| || Sbjct 112999418 ACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATATT 112999359 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||||||||||||||| |||| Sbjct 112999358 CCCTCTATACTATCATCTTTCAT 112999336 >seq1 Length=107035537 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| ||||||||||| || ||||||||| |||| || || |||||||| | Sbjct 97981414 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATTAGCTCATTTGAAAATGTCAAA 97981355 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||||| ||| | |||||| ||||| |||||||| Sbjct 97981354 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATAGC 97981317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712920970098240