Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arachis_20duranensis_20[refseq_20GCF_5F000817695.2_202017-04-25]
1,507 sequences; 1,084,261,490 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 1e-28
seq3 102 1e-16
seq1 87.8 3e-12
>seq6
Length=112752717
Score = 141 bits (156), Expect = 1e-28
Identities = 387/582 (66%), Gaps = 8/582 (1%)
Strand=Plus/Plus
Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686
|| || || ||||| || || ||||||||||||| || || ||||| || || ||
Sbjct 97172210 AAGCACGCGAAATCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTT 97172269
Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745
| || ||||||| ||||||||||| ||||||||||| | || ||| | || || ||
Sbjct 97172270 AAACCTGGCATTAACCCACGCTTTTTCAGCCAAAATATCG-AGCAGAAGCTCCCGGAGAA 97172328
Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA-TTAT 46804
||| || ||||| || ||||| ||||| | | || || ||| | | ||
Sbjct 97172329 GAAGATCCCTTCGACGCAGGCGAACGCGACGATGCGTTCCGCG-AACGATTCTGAGCCAT 97172387
Query 46805 GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCAT 46864
||||| | | | ||||| ||||| || |||||||||||||| | || || || || |
Sbjct 97172388 CGATCCATCGTAGGGCCCACTCAGCTTTCTTCTTTACACAAGGAACGGTCTCAATTGCGT 97172447
Query 46865 TAAAGAGAAAGtttttttCATCACTA-TCTTTAACATATGTATCTATTAAAAGACTATAC 46923
|||||| || || || | | | ||||| | || || || | | || || |||
Sbjct 97172448 GGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGCTGTAC 97172506
Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983
|| ||||| || ||||| || || || ||||| || ||||| || | ||| || |
Sbjct 97172507 ATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCCTCGGCG 97172566
Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGC 47042
| ||| ||||| | || | | ||| | ||| |||||| || || || || ||
Sbjct 97172567 ACCTGAACCTC-CTTCATGAACCTTCCGGCAAGATTCTCCAGGACGATGCCGTCGGATGC 97172625
Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102
|| || || || | || || | ||||| | || || || || | |||
Sbjct 97172626 GGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGATTCCCA 97172685
Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162
|| ||| || || | || ||||| || ||||||||||| || ||||| |||||
Sbjct 97172686 GTGGCGGATGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTCCGCTTT 97172745
Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204
|| ||||| | |||||| ||| | |||||||| || || ||
Sbjct 97172746 CTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACAT 97172787
>seq3
Length=135057546
Score = 102 bits (112), Expect = 1e-16
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552
||||||||||| | | || |||| |||||||| || |||||| ||| |||||||
Sbjct 113000037 TCTCTTTCATACTTATTGTACAACCTCTCAAATTCTTCACCCCAACAATCTGCCAAACCT 112999978
Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612
|| ||||| ||||| | ||| ||||| || |||| || ||| | || |||||||
Sbjct 112999977 GGTGCCTCATTGGGACAAAACAAAGACCATTCTCCATTAGACTGAACTCTTTCCATAAAG 112999918
Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646
|||||||| | ||| || ||| |||||||||||
Sbjct 112999917 AGATCAGGCACCCAAAGTGCATAAAATAGATCTC 112999884
Score = 100 bits (110), Expect = 4e-16
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
|||||| ||||| || | ||| || || ||||||||||||||| ||| ||| | | |
Sbjct 112999173 AGTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTG 112999114
Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111
||| ||| | | | | |||||| || | ||| |||||||| ||||| || | |||||
Sbjct 112999113 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCA 112999055
Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171
|||| ||||| || | ||| ||| ||| | | ||||| | ||| || | ||||
Sbjct 112999054 ACATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCA 112998995
Query 77172 AAGTTTTAAAACCAAAATA 77190
|||||||||||||| ||
Sbjct 112998994 GGGTTTTAAAACCAAAGTA 112998976
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|| || ||||| | ||| | ||||| | ||| | || | | ||| |||| ||| ||
Sbjct 112999538 CCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACCCGTAGCATAGGAAGAATACCA 112999479
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|| ||||| ||||| |||||| || || || ||| |||||||| || || |||
Sbjct 112999478 TTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGAA 112999419
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || ||||| ||||| ||| ||| | |||||| ||||| || ||||| ||
Sbjct 112999418 ACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATATT 112999359
Query 76934 CCCTCTATACTATCATCCATCAT 76956
||||||||||||||||| ||||
Sbjct 112999358 CCCTCTATACTATCATCTTTCAT 112999336
>seq1
Length=107035537
Score = 87.8 bits (96), Expect = 3e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| ||||| ||||||||||| || ||||||||| |||| || || |||||||| |
Sbjct 97981414 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATTAGCTCATTTGAAAATGTCAAA 97981355
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727
|| ||||||| ||| | |||||| ||||| ||||||||
Sbjct 97981354 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATAGC 97981317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712920970098240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |