Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 114 2e-20 seq3 102 1e-16 seq9 86.0 7e-12 >seq6 Length=137147148 Score = 114 bits (126), Expect = 2e-20 Identities = 406/625 (65%), Gaps = 12/625 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || |||||||||||||| || || || |||| || || ||||| || | Sbjct 120287563 ACAGCAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGA 120287622 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 24245 | || | || ||||||| || |||||||| ||||||||||| || ||| | | | || Sbjct 120287623 AGGTTAAACCTGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGA-GCAGAAGCTCCCG 120287681 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT- 24304 || ||||| || ||||| || || || || | | | | ||| | || || Sbjct 120287682 GAGAAGAAGATCCCTTCGACACAGGCGAACGCGACGATGCGT--TCCGCGAACGATTCTG 120287739 Query 24305 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | ||| ||||| | | ||||| ||||| ||||| ||||| ||||| | ||||| | Sbjct 120287740 AGCCATCGATCCATCGTAGGGCCCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAA 120287799 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGA 24422 | || | |||||| || || || | | | ||||| | || || || | | || Sbjct 120287800 TTGCGTGGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGG 120287858 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || ||||| || || || ||||| || || || || || || |||||||| | ||| Sbjct 120287859 CTGTACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCC 120287918 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 |||| | ||| || || | || | | | || | ||| || || || || || Sbjct 120287919 TCGGAGACCTGAACCTCCTTCATGAACCTTCCGGCGAGATTCTCCAGGACGATGCCATCG 120287978 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGTT 24600 || || || || || | || || | ||||| | ||| | |||| || | Sbjct 120287979 GATGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGAT 120288038 Query 24601 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 | ||| | || || || | || ||||| ||| ||||||| || ||||||| Sbjct 120288039 --TCCCAGTGGCGGAGGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCT 120288096 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 24720 | || || || ||||| | ||| || ||| | ||||| ||||| || || ||||| | Sbjct 120288097 CCGCTTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGT 120288156 Query 24721 TTGGATTTTTTGCAAGGATTGGTTC 24745 || ||| ||||||| ||| || Sbjct 120288157 CAGGGTTTGGAGCAAGGAGTGGCTC 120288181 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 |||||||||||||| ||||| || || ||| ||||| ||| |||||| ||||| Sbjct 67164552 AATACCATTGGATGTCCCATTTGTTCCACGGATGTAGCTGCCAGTGGCACAGATATTGTA 67164493 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 || || | ||| || |||||||| ||| || | || || || || ||||| Sbjct 67164492 AACAGAAACACCAATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTATC 67164433 Query 54358 ATAGATGCCCTCTATACTATCATCCATCAT 54387 ||| || ||||||||||||||||| |||| Sbjct 67164432 ATATATTCCCTCTATACTATCATCTTTCAT 67164403 >seq3 Length=136109863 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | ||| | || | | ||| |||| |||||| Sbjct 115211374 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGTAGCATAGGAACAATACC 115211315 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || ||| ||||| ||| |||||||||| || || || Sbjct 115211314 ATTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGA 115211255 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || |||||||| ||| ||| | || || || || |||||||| || Sbjct 115211254 AACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATAT 115211195 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||||||||||||||| |||| Sbjct 115211194 TCCCTCTATACTATCATCTTTCAT 115211171 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | || || ||||| || || |||||| ||| ||| | | | | Sbjct 115211007 GTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTGG 115210948 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || || ||| || ||||| || | ||| |||||||| || || || | ||| || Sbjct 115210947 TAAGTTCTGACAGCGGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 115210889 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||||||||| || ||||| || | ||| | | |||| | |||||| | |||| Sbjct 115210888 CATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCAG 115210829 Query 54604 AGTTTTAAAACCAAAATA 54621 ||||| |||||||| || Sbjct 115210828 GGTTTTGAAACCAAAGTA 115210811 >seq9 Length=147089397 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 |||||||||||||| ||||| || || ||| ||||| ||| |||||| ||||| Sbjct 92823064 AATACCATTGGATGTCCCATTTGTTCCACGGATGTAGCTGCCAGTGGCACAGATATTGTG 92823123 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 ||| || | ||| || |||||||| ||| || | || || || || ||||| Sbjct 92823124 AATAGAAACACCAATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTATC 92823183 Query 54358 ATAGATGCCCTCTATACTATCATCCATCAT 54387 ||| || ||||||||||||||||| |||| Sbjct 92823184 ATATATTCCCTCTATACTATCATCTTTCAT 92823213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717533007040