Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 134 2e-26 seq6 96.9 5e-15 seq9 86.0 9e-12 seq5 86.0 9e-12 >seq3 Length=136109863 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| | || || || || || ||| | ||| ||||| Sbjct 25368884 AATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACAATCACTTTGGAGGTTGAAAGTTC 25368825 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| |||| | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 25368824 TGATACAATTGATAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATCCCTCCGGATCA 25368765 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || |||||||| || || | || ||| | || || | | ||||| || Sbjct 25368764 GCAGAGGCTCATCTTTGCAGGGAAGCAGCTTGAAGATGGCCGTACTCTTGCTGATTACAA 25368705 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||||||||||||||| | | | || |||||||| ||| || Sbjct 25368704 CATCCAAAAGGAATCTACTTTGCATTTGGTTCTGAGGCTCCGTGGTGGTATGCAAATTT 25368646 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || ||||| || || || | ||| | ||| Sbjct 25369795 ATGCAAATCTTCGTGAAAACCTTGACGGGCAAGACCATCACCCTTGAGGTGGAAAGTTCC 25369736 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || |||||||| ||||||||||| || || ||||| || Sbjct 25369735 GATACAATTGATAATGTCAAGGCCAAAATTCAGGATAAAGAAGGAATCCCTCCTGACCAG 25369676 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||||||||| || ||||||||| | || ||| || |||| | | ||||| || Sbjct 25369675 CAAAGGCTTATTTTCGCCGGAAAACAACTTGAAGATGGTAGAACCCTTGCCGATTACAAC 25369616 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||||| || | || ||||| | |||||| ||||||| || ||| || Sbjct 25369615 ATTCAGAAGGAATCCACACTCCACTTGGTGCTTCGTTTAAGAGGTGGCATGCAAATTT 25369558 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||||||||| || || || ||||| | ||| | || | Sbjct 25369111 ATGCAAATCTTTGTCAAGACACTAACCGGAAAGACAATAACCCTGGAGGTCGAGTCTTCA 25369052 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||| ||||| ||||| |||||||| || Sbjct 25369051 GACACCATTGACAATGTCAAAGCAAAAATCCAAGACAAAGAGGGTATCCCACCTGACCAG 25368992 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || || || || |||||| | | || | | ||||| || Sbjct 25368991 CAGAGACTTATCTTTGCTGGTAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAAC 25368932 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || |||||| | ||||| || | |||||||| || Sbjct 25368931 ATTCAGAAGGAGTCCACCTTGCATCTTGTTTTGCGACTCCGAGGTGGAAT 25368882 >seq6 Length=137147148 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || ||||| || || || |||||| | ||| ||||| | Sbjct 34075474 ATGCAGATCTTTGTGAAAACCCTAACGGGAAAGACCATAACTCTCGAGGTTGAATCTTCG 34075415 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| || | || || ||||||||||||||||| || || ||||||||| Sbjct 34075414 GACACAATAGACAACGTGAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCTGATCAA 34075355 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || || ||||||||||| | | || | | ||||| || Sbjct 34075354 CAGCGACTCATCTTCGCTGGGAAGCAATTAGAGGACGGGAGGACGCTTGCTGATTACAAC 34075295 Query 124719 ATTCAAAAAGAATCAACTTTGCAT-TTGGTTTTACGTT 124755 || || || || || || |||||| ||| | ||| ||| Sbjct 34075294 ATACAGAAGGAGTCGACGTTGCATCTTGTTCTTAGGTT 34075257 >seq9 Length=147089397 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | ||| | || ||| Sbjct 145228387 ATGCAGATCTTTGTTAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGCTCC 145228446 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| || | || || || ||||| || ||||| || || || ||||| Sbjct 145228447 -GATACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCA 145228505 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || | |||||| | || || | | |||||||| Sbjct 145228506 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGATTATAA 145228565 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || || || | || ||||| || || | || ||||| || Sbjct 145228566 TATCCAAAAGGAGTCCACACTCCACTTGGTCTTGCGGCTTCGTGGTGGCAT 145228616 >seq5 Length=149900536 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || ||||| ||| | ||| | || Sbjct 20298013 ATGCAAATCTTTGTGAAGACCCTCACTGGAAAGACTATCACTCTCGAGGTCGAGAGTTCC 20297954 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || |||||||||||||| ||||| || ||||| ||||| Sbjct 20297953 GACACCATCGATAACGTCAAGGCAAAAATTCAAGATAAGGAAGGGATCCCACCGGATCAG 20297894 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || || ||||| ||| | ||||| | || || || | || || || Sbjct 20297893 CAACGTCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCCGACTACAAC 20297834 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | || | ||| | ||| | || ||||| || Sbjct 20297833 ATCCAGAAGGAATCCACCCTCCACCTCGTTCTCCGTCTCCGTGGTGGCAT 20297784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755450825126400