Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq3 87.8 2e-12 >seq6 Length=137147148 Score = 143 bits (158), Expect = 3e-29 Identities = 406/617 (66%), Gaps = 10/617 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || || |||| || || ||||| || | Sbjct 120287563 ACAGCAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGA 120287622 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | || ||||||| || |||||||| ||||||||||| || ||| |||| Sbjct 120287623 AGGTTAAACCTGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGAGCAGAAGCTCCCGG 120287682 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT-- 33751 | |||||||| ||||| || || || || | | | ||| | || || Sbjct 120287683 AGAAGAAGATCCCTTCGACACAGGCGAACGC--GACGATGCGTTCCGCGAACGATTCTGA 120287740 Query 33752 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | ||| ||||| | | ||||| ||||| ||||| ||||| ||||| | || || || Sbjct 120287741 GCCATCGATCCATCGTAGGGCCCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAAT 120287800 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATAAGTATCGATCAAAAGAC 33870 || | |||||| || || || | | | ||||| | ||||| |||| | || | Sbjct 120287801 TGCGTGGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGGC 120287859 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || ||||| || || || ||||| || |||||||| | |||| Sbjct 120287860 TGTACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCCT 120287919 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| | ||| || || | || | | | || | ||| || || || ||||| Sbjct 120287920 CGGAGACCTGAACCTCCTTCATGAACCTTCCGGCGAGATTCTCCAGGACGATGCCATCGG 120287979 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGTTAGTTT 34048 || || || || || | || || | ||||| | ||| | |||| || | Sbjct 120287980 ATGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGAT- 120288038 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | ||| | || || || | || ||||| ||| ||||||| || |||||||| Sbjct 120288039 -TCCCAGTGGCGGAGGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCTC 120288097 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 || || || ||||| | ||| || ||| | |||||||||||||| || ||||| | Sbjct 120288098 CGCTTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGTC 120288157 Query 34169 TGGATTTGGTGCAAGGA 34185 || ||||| ||||||| Sbjct 120288158 AGGGTTTGGAGCAAGGA 120288174 >seq3 Length=136109863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || || ||||| || || |||||| ||| ||| | | | | Sbjct 115211007 GTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTGG 115210948 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||| || ||||| || | ||| |||||||| || || || | ||| || Sbjct 115210947 TAAGTTCTGACAGCGGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 115210889 Query 63782 CATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 ||||||||| || ||||| |||| ||| ||| | ||||| | |||||| | ||| Sbjct 115210888 CATGTGCTGGGGCCTTTCCACAACCTTTCCTTG--AACCTTCAAGAGGTAGGACCTCTCC 115210831 Query 63840 AAAGTTTTAAAACCAAAATA 63859 | ||||| |||||||| || Sbjct 115210830 AGGGTTTTGAAACCAAAGTA 115210811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813285749440