Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 107 3e-18 seq6 105 9e-18 seq9 91.5 2e-13 >seq3 Length=136109863 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | ||| || | ||| | || | | ||| |||| |||||| Sbjct 115211374 TCCCCCTTGATCAACATAGCGAGCAGTATCATTGAACACACGTAGCATAGGAACAATACC 115211315 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || ||| ||||| ||| | |||||||| || || || Sbjct 115211314 ATTGGATGTCCCATTCGTTCCACGGATGTAGCTGCCAGTGGCACGAATGTTGTGAACAGA 115211255 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||||||||| ||| ||| | || || || || |||||||| || Sbjct 115211254 AACACCAATTCCCCCTGCTGATTTGCTGATGACAGCACACTCCTTCAAAGTATCATATAT 115211195 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||||||||||||||| |||| Sbjct 115211194 TCCCTCTATACTATCATCTTTCAT 115211171 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | || || ||||| || || |||||| ||| ||| | | | | Sbjct 115211007 GTTCCAGCATTGAAAAGTGTTGGGGAAGCATGAGTGAACCATCTTTGAGACATCATGTGG 115210948 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||| || ||||| || | ||| |||||||| || || || | ||| || Sbjct 115210947 TAAGTTCTGACAGCGGATTCTATGTCATCCTTG-TGAATTCCAACAGCAACCCTCATCAA 115210889 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||| || ||||| || | ||| | | ||||| | |||||| | |||| Sbjct 115210888 CATGTGCTGGGGCCTTTCCACAACCTTTCCTTGAACCTTCAAGAGGTAGGACCTCTCCAG 115210829 Query 66635 AGTTTTAAAACCAAAATA 66652 ||||| |||||||| || Sbjct 115210828 GGTTTTGAAACCAAAGTA 115210811 >seq6 Length=137147148 Score = 105 bits (116), Expect = 9e-18 Identities = 404/625 (65%), Gaps = 12/625 (2%) Strand=Plus/Plus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || || || |||| || || ||||| || | Sbjct 120287563 ACAGCAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGA 120287622 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || | || ||||||| || |||||||| ||||||||||| || ||| | | | || Sbjct 120287623 AGGTTAAACCTGGCATTAACCCGCGCTTTTTCAGCCAAAATATCGA-GCAGAAGCTCCCG 120287681 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 36327 || ||||| || ||||| || || || || | | | ||| | || || Sbjct 120287682 GAGAAGAAGATCCCTTCGACACAGGCGAACGC--GACGATGCGTTCCGCGAACGATTCTG 120287739 Query 36328 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | ||| ||||| | | ||||| ||||| ||||| ||||| ||||| | ||||| | Sbjct 120287740 AGCCATCGATCCATCGTAGGGCCCACTCGGCTTTCTTCTTTACGCAAGGAACGGTCTCAA 120287799 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGA 36445 | || | |||||| || || || | | | ||||| | || || || | | || Sbjct 120287800 TTGCGTGGAAGAGACGATTCTTCTC-TGATGAGTCTTTGATGTAAGTTTCGAGAAGGAGG 120287858 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 || ||||| || || || ||||| || || || || || || |||||||| | ||| Sbjct 120287859 CTGTACATCTCTGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGTGCC 120287918 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 |||| | ||| || || | || | | | || | ||| || || || || || Sbjct 120287919 TCGGAGACCTGAACCTCCTTCATGAACCTTCCGGCGAGATTCTCCAGGACGATGCCATCG 120287978 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG--TTTGGTGTTAGTT 36623 || || || || || | || || | ||||| | ||| | |||| || | Sbjct 120287979 GATGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGGCGCTCGCCGTCGGTGAGAGAT 120288038 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 | ||| | || || || | || ||||| ||| ||||||| || ||||||| Sbjct 120288039 --TCCCAGTGGCGGAGGTCGCCGGAAAGGTCAACTTCCTCCGCTGTCCAGAACGATGCCT 120288096 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT 36743 | || || || ||||| | ||| || ||| | ||||| ||||| || || ||||| | Sbjct 120288097 CCGCTTTCTTGTACATTTCCCATATCTCAGGGTATTGGATTGGGAACATGCAGAATCTGT 120288156 Query 36744 TTTGATTTTTTGCAAGGATTGGTTC 36768 | ||| ||||||| ||| || Sbjct 120288157 CAGGGTTTGGAGCAAGGAGTGGCTC 120288181 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||||||||||||||| ||||| || || ||| ||||| ||| | |||| ||||| Sbjct 67164552 AATACCATTGGATGTCCCATTTGTTCCACGGATGTAGCTGCCAGTGGCACAGATATTGTA 67164493 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 || || | ||| ||||||||||| ||| || | || || || || ||||| Sbjct 67164492 AACAGAAACACCAATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTATC 67164433 Query 66389 ATAGATGCCCTCTATACTATCATCCATCAT 66418 ||| || ||||||||||||||||| |||| Sbjct 67164432 ATATATTCCCTCTATACTATCATCTTTCAT 67164403 >seq9 Length=147089397 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||||||||||||||| ||||| || || ||| ||||| ||| | |||| ||||| Sbjct 92823064 AATACCATTGGATGTCCCATTTGTTCCACGGATGTAGCTGCCAGTGGCACAGATATTGTG 92823123 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 ||| || | ||| ||||||||||| ||| || | || || || || ||||| Sbjct 92823124 AATAGAAACACCAATTCCCCCTGCTGATTTGCTAATGACAGCACACTCCTTCAAAGTATC 92823183 Query 66389 ATAGATGCCCTCTATACTATCATCCATCAT 66418 ||| || ||||||||||||||||| |||| Sbjct 92823184 ATATATTCCCTCTATACTATCATCTTTCAT 92823213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168291516320