Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq5 87.8 2e-12 >seq6 Length=137147148 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | ||| | ||| | ||| ||||| ||||||||||| |||||| Sbjct 34075475 GCCGCCGCGAAGACGGAGAACAAGGTGGAGCGTGGACTCCTTTTGAATGTTGTAATCGGC 34075534 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || |||||||| || || |||| || || |||||||||||||| Sbjct 34075535 GAGGGTGCGACCATCCTCTAGCTGTTTCCCTGCGAAGATGAGTCGCTGCTGATCGGGAGG 34075594 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | || | || | | || | |||||||| || || | Sbjct 34075595 AATGCCTTCTTTGTC-TTGAATCTTGGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAA 34075653 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||| ||||| | ||||| ||||| || ||||| Sbjct 34075654 CCTCCAGAGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAAATCTGCAT 34075702 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | ||| ||||| || || || ||||| ||| Sbjct 34075703 GCCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGGATATTATAGTCGGC 34075762 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||||||||| || || || |||| ||||| ||||| || || || Sbjct 34075763 AAGGGTGCGACCGTCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGCGG 34075822 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | || |||| || |||||| Sbjct 34075823 GATGCCTTCCTTGTCTTGGATCTTAGCCTTCACATTGTCAATGGTATCGGAGGACTCCAC 34075882 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 34075883 CTCCAAGGTAATCGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCAT 34075930 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| |||||| || |||| ||| || ||||| || ||| Sbjct 34075050 GTGGACTCCTTTTGAATGTTGTAATCGGCCAGAGTGCGTCCGTCCTCAAGCTGCTTCCCA 34075109 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || || || |||||||| || ||| || Sbjct 34075110 GCAAAGATTAGACGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTGTATCTTTGCCTTC 34075169 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | ||||||||| | || | |||||| ||||| | || Sbjct 34075170 ACGTTATCAATAGTATCAGAACTCTCCACCTCTAACGTTATCGTCTTCCCGGTTAGAGTC 34075229 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 34075230 TTCACGAAAATCTGCAT 34075246 >seq5 Length=149900536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| || ||||| || ||||| |||||| | ||||| ||| || ||||| || || Sbjct 23663907 CGTCGATTCTTTCTGGATGTTGTAATCGGCGAGTGTGCGGCCGTCCTCAAGCTGCTTTCC 23663848 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || |||| || || ||||| || || || || ||||||||||| ||| || || Sbjct 23663847 GGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATTCCTTCTTTGTCTTGGATCTTGGCCTT 23663788 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | |||||||||| ||| | ||||| || || | || Sbjct 23663787 CACGTTGTCGATGGTGTCGGAAGATTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGT 23663728 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 23663727 TTTCACGAAAATCTGCAT 23663710 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || || || || ||| || |||| | ||||| ||||| Sbjct 20297127 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAAGGTGCGCCCATCTTCAAGCTGC 20297186 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| |||||| | ||||| || || || || ||||| ||||| ||| || Sbjct 20297187 TTACCAGCAAAGATCAACCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCTTGGATCTTA 20297246 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | ||||| | | ||||||||||| || | || || ||||| Sbjct 20297247 GCTTTGACATTATCAATGGTGTCAGAGCTCTCCACCTCAAGAGTGATGGTTTTCCCGGTG 20297306 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || ||||| || |||||| Sbjct 20297307 AGGGTCTTCACGAAAATCTGCATA 20297330 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | ||| | || || || || || ||||| || ||| Sbjct 20297786 GCCACCACGGAGACGGAGAACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 20297845 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| ||||| || || || || ||||||||||||||||||| || || Sbjct 20297846 CAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGATCCGGTGG 20297905 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| || || ||| |||||| || | | || | ||||||| ||| | Sbjct 20297906 GATCCCTTCCTTATC-TTGAATTTTTGCCTTGACGTTATCGATGGTGTCGGAACTCTCGA 20297964 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || || | || || || || |||||||| Sbjct 20297965 CCTCGAGAGTGATAGTCTTTCCAGTGAGGGTCTTCACAAAGATTTGCAT 20298013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060601961600