Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 seq6 89.7 4e-13 seq9 86.0 5e-12 >seq3 Length=136109863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| || || | ||||||||| | || |||||||||||||| ||||| Sbjct 25368465 TCCTTTTGGATATTATAGTCTGCCAATGTACGACCATCCTCCAATTGTTTGCCAGCAAAG 25368524 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 || | | ||| ||||| | || | ||| || || || ||| ||| | | || || | Sbjct 25368525 ATGAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTC-CTGAATCTTCGCCTTCACATT 25368583 Query 43038 GCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 ||| || ||| ||| ||||| || | || || ||||| || || || || |||| Sbjct 25368584 ATCAATGGTATCG-GAGCTTTCGACCTCCAAAGTAATGGTTTTCCCCGTCAGGGTCTTCA 25368642 Query 43097 CAAAAATTTGCAT 43109 ||||||||||||| Sbjct 25368643 CAAAAATTTGCAT 25368655 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || |||| || || | ||| | ||| |||||| || | |||||||| | Sbjct 25368885 CCACCTCGGAGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCA 25368944 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||| || || || ||||| || | || ||| || || | || Sbjct 25368945 AGGGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 25369004 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || ||| ||||||| || ||| ||||| || |||||| Sbjct 25369005 ATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTGTCAATGGTGTCTGAAGACTCGACC 25369064 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| || ||||||||||| || || ||||| |||||||| Sbjct 25369065 TCCAGGGTTATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 25369111 >seq6 Length=137147148 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42880 TCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCG 42939 || || ||||| || || | || | ||||| ||| ||||||||| | ||||||||| Sbjct 34075017 TCACCGCCACGGAGCCTGAGAACAAGATGGAGGGTGGACTCCTTTTGAATGTTGTAATCG 34075076 Query 42940 GACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCC 42999 | || || ||| |||| || | || || || ||||| || | ||||| || || | Sbjct 34075077 GCCAGAGTGCGTCCGTCCTCAAGCTGCTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGT 34075136 Query 43000 GGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 || | || ||||| || ||| ||| | || || | ||| || || | ||| Sbjct 34075137 GGAATCCCCTCTTTGTC-CTGTATCTTTGCCTTCACGTTATCAATAGTATCAGAACTCTC 34075195 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 34075196 CACCTCTAACGTTATCGTCTTCCCGGTTAGAGTCTTCACGAAAATCTGCAT 34075246 >seq9 Length=147089397 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || ||||| |||| ||| ||||||||| | ||| ||||||| Sbjct 145228614 GCCACCACGAAGCCGCAAGACCAAGTGGAGTGTGGACTCCTTTTGGATATTATAATCGGC 145228555 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || || | || ||||||||||| || | | ||| ||||| | || Sbjct 145228554 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGAGG 145228495 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| || | | ||| ||| ||| ||||| Sbjct 145228494 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATTGTATCG-GAGCTCTCGA 145228436 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || |||||||| || || || ||||| || ||||| Sbjct 145228435 CCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTAACAAAGATCTGCAT 145228387 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | ||||| | |||| || |||||| || | ||||||||||| Sbjct 145229070 GCCACCACGGAGACGCAACACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGC 145229011 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | || ||||||||||| || | | || || || | || Sbjct 145229010 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGAGG 145228951 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| || ||| |||||| ||| ||| | Sbjct 145228950 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGG-AGCTCTCTA 145228892 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||||||||| || || |||||||| || ||||| Sbjct 145228891 CCTCAAGGGTGATGGTTTTTCCGGTAAGGGTCTTCACAAAGATCTGCAT 145228843 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || ||||| |||| ||| |||||| || | ||||||||||| Sbjct 145228842 GCCACCACGAAGCCGCAAGACCAAGTGGAGTGTGGACTCCTTCTGGATATTGTAATCGGC 145228783 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || || | || |||||||| || || | | || || || | || Sbjct 145228782 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTTTGCTGGTCCGGAGG 145228723 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || |||| | ||||| || ||| |||||| ||| ||| | Sbjct 145228722 GATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCG-GAGCTCTCTA 145228664 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| ||||| || || || ||||| || ||||| Sbjct 145228663 CCTCAAGGGTGATGGTTTTCCCGGTAAGGGTCTTTACAAAGATCTGCAT 145228615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367052927784