Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 122 6e-23 seq6 95.1 9e-15 seq9 87.8 1e-12 >seq3 Length=136109863 Score = 122 bits (134), Expect = 6e-23 Identities = 174/244 (71%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| || | | || || || || ||||| || || || |||||||||||| Sbjct 25369567 TGCCACCTCTTAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGG 25369626 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | ||||| | |||||| || ||| | || | | ||| ||||| | Sbjct 25369627 CAAGGGTTCTACCATCTTCAAGTTGTTTTCCGGCGAAAATAAGCCTTTGCTGGTCAGGAG 25369686 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | ||||||||||| || ||||||| ||| ||| | || || |||||| | |||| | Sbjct 25369687 GGATTCCTTCTTTATCCTGAATTTTGGCCTTGACATTATCAATTGTATCGGAACTTTCCA 25369746 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT-TTGAAAAT 15373 | || | ||| ||||| || || |||| ||||| || || |||||||| | || || | Sbjct 25369747 CCTCAAGGGTGATGGTCTTGCCCGTCAAGGTTTTCACGAAGATTTGCATCTGTTCAACAC 25369806 Query 15374 AAAA 15377 |||| Sbjct 25369807 AAAA 25369810 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | | ||| || ||||| || || || || || ||||||||||| Sbjct 25369339 TGCCACCTCTCAAACGGAGAACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTG 25369398 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || | || || ||||| | ||||| | || ||||| || Sbjct 25369399 CTAGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTG 25369458 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || || |||||||| ||||| ||| || ||| | || ||||| || ||| Sbjct 25369459 GGATACCCTCTTTGTCTTGGATTTTAGCT-TTGACATTGTCAATGGTGTCTGAGGATTCG 25369517 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| |||||||| || |||| || || || ||||||||||| Sbjct 25369518 ACCTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTCACGAAAATTTGCAT 25369567 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217 ||| ||||| || || ||||| || || || || | ||| || | || || ||| Sbjct 25368452 ATGGAGGGTCGATTCCTTTTGGATATTATAGTC--TGCCAATGTACGACCATCCTCCAAT 25368509 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 ||||||||||| | || | | || || || ||||| || || ||||| ||| Sbjct 25368510 TGTTTGCCAGCAAAGATGAGCCTCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATC 25368569 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 || ||| ||| | || ||||||||| |||| || || || ||||||||||| || Sbjct 25368570 TTCGCCTTCACATTATCAATGGTATCGGAGCTTTCGACCTCCAAAGTAATGGTTTTCCCC 25368629 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || ||||||||||||||| Sbjct 25368630 GTCAGGGTCTTCACAAAAATTTGCATA 25368656 >seq6 Length=137147148 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| |||||||| || ||||| |||||||||||| ||| | | |||| || Sbjct 34075037 AACAAGATGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAGAGTGCGTCCGTCCTC 34075096 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || ||||| | || | ||| || ||||| |||||| || |||||||| Sbjct 34075097 AAGCTGCTTCCCAGCAAAGATTAGACGCTGCTGGTCCGGTGGAATCCCCTCTTTGTCCTG 34075156 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||| ||| || | || || ||||| | | || || ||||| || || || | Sbjct 34075157 TATCTTTGC-CTTCACGTTATCAATAGTATCAGAACTCTCCACCTCTAACGTTATCGTCT 34075215 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| || || ||||| ||||| Sbjct 34075216 TCCCGGTTAGAGTCTTCACGAAAATCTGCAT 34075246 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | ||| || | ||| | ||| | || || || || |||||||||||||| Sbjct 34075248 CCTCCACGCAACCTAAGAACAAGATGCAACGTCGACTCCTTCTGTATGTTGTAATCAGCA 34075307 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| |||| |||||||| || |||||| | || | || ||||| || || Sbjct 34075308 AGCGTCCTCCCGTCCTCTAATTGCTTCCCAGCGAAGATGAGTCGCTGTTGATCAGGAGGG 34075367 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||| ||| ||| || | ||||| || || | ||| || Sbjct 34075368 ATTCCTTCTTTATCTTGAATCTTGGCCTTCACGTTGTCTATTGTGTCCGAAGATTCAACC 34075427 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || || || ||||| ||||| || ||||| Sbjct 34075428 TCGAGAGTTATGGTCTTTCCCGTTAGGGTTTTCACAAAGATCTGCAT 34075474 >seq9 Length=147089397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||| || || || | || | ||||| || || Sbjct 145229501 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGCAAGGGTCCTTCCATCTTCCAACTGC 145229442 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | ||||| | || ||||| ||| || ||||| || || ||| || Sbjct 145229441 TTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGAATCTTA 145229382 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| ||| | || || || ||||| ||||| ||||| ||| Sbjct 145229381 GCCTTCACATTGTCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTACCGGTC 145229322 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||| || |||||||| ||||| Sbjct 145229321 AAAGTCTTCACAAAAATCTGCAT 145229299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362176781095668