Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arachis_20ipaensis_20[refseq_20GCF_5F000816755.2_202017-04-25] 548 sequences; 1,353,504,219 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq5 86.0 5e-12 >seq3 Length=136109863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| ||||| | | || || | ||||| || |||||||| ||||| |||||||| | Sbjct 25368883 TTCCACCTCGGAGTCGCAAAACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAATCAG 25368942 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||| ||| ||||| ||| | |||||||||||||| || | Sbjct 25368943 CAAGGGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATAAGTCTCTGCTGGTCAGGTG 25369002 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| ||||| ||| || | | | | || || || ||| Sbjct 25369003 GGATACCCTCTTTGTCTTGGATTTTTGCTTTGACATTGTCAATGGTGTCTGAAGACTCGA 25369062 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || || |||| || |||||||| |||||||| Sbjct 25369063 CCTCCAGGGTTATTGTCTTTCCGGTTAGTGTCTTGACAAAGATTTGCAT 25369111 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| || || || |||||||| |||||||||||||| || | || | | || Sbjct 25369128 AACACCAAATGTAAAGTGGACTCCTTCTGAATATTGTAATCTGCAAGCGTCCTTCCATCT 25369187 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| ||||| || | || || ||||| ||||| || | |||||||||||| Sbjct 25369188 TCAAGCTGCTTACCGGCGAAGATGAGCCTCTGTTGATCTGGTGGAATGCCCTCTTTGTCC 25369247 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | | ||||| | ||| || | || ||||| Sbjct 25369248 TGAATCTTAGCTTTCACATTGTCAATGGTATCTGAGGATTCCACCTCCAGTGTTATGGTC 25369307 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| ||||| ||||||||||| ||||| Sbjct 25369308 TTCCCTGTCAAAGTCTTGACAAAAATCTGCAT 25369339 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | |||| ||| | ||| |||||||| ||||| |||||||| || Sbjct 25369341 CCACCTCTCAAACGGAGAACCAAGTGAAGCGTTGACTCCTTCTGAATGTTGTAATCTGCT 25369400 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| ||||| || || ||| |||| | |||||||| || || Sbjct 25369401 AGTGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 25369460 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | ||||||||||| ||||| ||| || | | | | || || ||| | || Sbjct 25369461 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTGTCAATGGTGTC-TGAGGATTCGAC 25369519 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || || || || || ||||||||||| Sbjct 25369520 CTCTAAGGTGATGGTTTTCCCAGTCAAGGTCTTCACGAAAATTTGCAT 25369567 >seq5 Length=149900536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||||||||| |||||||||||||| || | || | | || || Sbjct 20296892 CACAAGGTGAAGAGTAGACTCCTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCTTC 20296951 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| || || || | || | |||||||| ||| ||| | ||||| ||||| Sbjct 20296952 CAACTGCTTCCCTGCGAAGATCAACCTCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTG 20297011 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | | | | || ||| |||| || | ||||||||| || Sbjct 20297012 AATCTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCAAGGGTAATGGTCTT 20297071 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| || |||||||| ||||| Sbjct 20297072 CCCAGTCAAAGTCTTAACAAAAATCTGCAT 20297101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414570031171912